Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0896 ATGGCCACCTCTGACTCTGTTCCAGACTCACGTGTCTTGCGCATGCACTACTACTCCACTGACGACGACCAAGGCGAAGATGACGAGGAAGACGATGACCTCGACTTCGACCACACCAATGTCGACGTGGAAGATGAATCGAAGAAGCCTGATACTGTTTCCGATGGCGGTTTCCGGCGGGAGTTCTGGGTGTTGCTGGACCCGCGAGCCAAGTGGGTACAAGAATGGAACAGGGTGTTCCTCCTGGTGAGCGCCACGGGGCTTTTCGTGGACCCCCTGTTCTTTTACGCGCTATCCATAAGCGACACGTGTATGTGCCTCTTCGTCGACGGCTGGCTGGTGGTCACCGTCACCGTGATCCGGTGCATGACGGACACGTTGCACGTGTGGAACATGTGGCTCCAGTTCAAGATGGCTAAACGCTCTTCTTTTCTCGCCAGAGACGCTTACTCCTTGCGTGGTGGCTATGCTCTTCGCTACCTCAAGGATAAGAGGGGCTTCCTCTTTGACCTCTTCGTAATCCTCCCCATTCCACAGATTGTGCTGTGGGTGGCAATTCCCTCTCTTTTGGAGAAAGGATCGATCACGTTGGTGATGACAGTGTTCTTAATCATGTTCCTCTTTCAATATCTTCCCAAAATTTATCATTCCGTTTGCCTCTTGCGTCGCATGCAAAACCTCTCTGGCTACATTTTTGGAACCGTTTGGTGGGGCATCGCCCTCAACATGATCGCGTATTTTGTAGCTTCCCATGCAGCAGGGGCATGTTGGTACTTATTAGGGTTGCAAAGGGCAGCAAAGTGTTTGGAAGAACAGTGTGCAAAAACAGCTGGTTGTGGCTTGAGGACACTGTGCTGCAAAGAACCTATATACTATGGAGGCACTAGCATTGTAAGGGACAAAACCAGATTGTCATGGGCTGAAAACAGGGAAGCAAGGTCTACTTGTTTGGACAGTGCTGATAACTACGACTATGGTGCATACGCATGGTCTGTTCAACTAGTTACAAATGATAACAGATTGGAAAAGATACTTTTCCCTATCTTCTGGGGCCTAATGACTCTCAGCACTTTTGGGAACCTAGAAAGCACACCGGAGAGGCTAGAAGTGATTTTCAACATTATTGTGTTGACTAGTGGCCTCCTTCTCGTGACCATGCTGATTGGAAACATCAAGGTGTTTTTGCATGCGACAACATCAAAGAAGCAAGCAATGCAACTGAAGATGAGGAACATTGAATGGTGGATGAGCAAAAGGAGGTTGCCACAAAGTTTCCGGCAGCGCGTGAGAAACTATGAGAGGCAACGTTGGGCGGCAATGCGAGGGGTTGATGAATGCCAAATGATAAAGAATCTCCCTGAGGGACTAAGAAGAGACATCAAGTACCATCTTTGTTTGGATTTGGTGAGACAGGTGCCACTGTTTCAGCATATGGATGATTTGGTGCTAGAGAACATCTGTGACCGTGTGAAGTCCCTTGTATTTACAAAAGGAGAAACAATAACGAGAGAGGGAGACCCAGTTCAAAGAATGTTATTTGTAGTAAGAGGTCACCTTCAAAGCAGCCAAGTCCTACGAGACGGGGTGAAAAGTTACTGCATGTTAGGCCCAGGGAACTTCAGCGGCGACGAGCTTCTTTCATGGTGTTTGAGAAGGCCCTTCATAGAGCGTCTTCCACCGTCATCAAGCACCTTGGTAACACTTGAAGCCACGGAGGCATTTGGGCTAGAAGCAAAGGACGTGAAGTACGTGACACAGCACTTCAGGTACACATTTGTGAAGGAAAAGGTTAAGAGAAGTGCCAGGTATTACTCCCCAGGCTGGAGAACTTGGGCTGCAGTGGCCATTCAATTGGCTTGGAGAAGGTATAAGCACCGTTTGACTTTGACATGTTTGTCCTTCATAAGGCCTCGCAGACCTGCCTCAAGGTGCACTTCCATGGAAGAGGATAGGCTTCGTCTGTATACGGCTTTGCTAACCTCACCAAAGCCTAACCAGGATGACTTTGACTGCTGA 2016 0.4876 MATSDSVPDSRVLRMHYYSTDDDQGEDDEEDDDLDFDHTNVDVEDESKKPDTVSDGGFRREFWVLLDPRAKWVQEWNRVFLLVSATGLFVDPLFFYALSISDTCMCLFVDGWLVVTVTVIRCMTDTLHVWNMWLQFKMAKRSSFLARDAYSLRGGYALRYLKDKRGFLFDLFVILPIPQIVLWVAIPSLLEKGSITLVMTVFLIMFLFQYLPKIYHSVCLLRRMQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGLQRAAKCLEEQCAKTAGCGLRTLCCKEPIYYGGTSIVRDKTRLSWAENREARSTCLDSADNYDYGAYAWSVQLVTNDNRLEKILFPIFWGLMTLSTFGNLESTPERLEVIFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMSKRRLPQSFRQRVRNYERQRWAAMRGVDECQMIKNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLVFTKGETITREGDPVQRMLFVVRGHLQSSQVLRDGVKSYCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLVTLEATEAFGLEAKDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTCLSFIRPRRPASRCTSMEEDRLRLYTALLTSPKPNQDDFDC* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0896 671 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 6 668 - -
Pvu5g0896 671 MobiDBLite consensus disorder prediction 17 53 - -
Pvu5g0896 671 MobiDBLite consensus disorder prediction 22 40 - -
Pvu5g0896 671 CDD CAP_ED 474 580 IPR000595 -
Pvu5g0896 671 SUPERFAMILY Voltage-gated potassium channels 68 395 - -
Pvu5g0896 671 Pfam Cyclic nucleotide-binding domain 494 582 IPR000595 -
Pvu5g0896 671 SMART cnmp_10 474 603 IPR000595 -
Pvu5g0896 671 ProSiteProfiles cAMP/cGMP binding motif profile. 474 584 IPR000595 -
Pvu5g0896 671 Gene3D Helix hairpin bin 399 465 - -
Pvu5g0896 671 Gene3D Jelly Rolls 472 590 IPR014710 -
Pvu5g0896 671 Pfam Ion transport protein 76 391 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pvu5g0896 671 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 6 668 - -
Pvu5g0896 671 SUPERFAMILY cAMP-binding domain-like 400 588 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0896 Pvu-Chr5 23026002 23035011 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0896 65 670 Ion Channels AT5G54250 78.862 0.0 998
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0896 K05391 - gmx:100800795 1177.54