Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0875 ATGGAGAGCACCGACTCATCAACCGGTTCACAACAACAACCGCAATTGCCACCTGGGTTCCGCTTCCACCCCACTGACGAGGAGCTCGTCGTTCACTACCTCAAGAAAAAAACAGCTTCGGTTCCTCTTCCAGTCGCCATAATCGCTGAGGTTGATCTCTACAAGTTCGATCCATGGGAGCTACCCGCTAAGGCGACGTTTGGGGAGCAGGAGTGGTACTTCTTTAGTCCAAGGGACAGGAAGTATCCGAACGGCGCGAGGCCAAACAGGGCGGCCACATCTGGGTATTGGAAGGCCACTGGGACTGATAAGCCTGTGTTGACCTCTGGGGGAACCCAGAAGGTTGGGGTGAAAAAGGCTTTGGTTTTCTATGGAGGGAAGCCCCCAAGAGGGATCAAAACTAATTGGATCATGCATGAGTATAGGCTTGCTGATAACAAGCCTAACAATAGGCCTCCTGGCTGTGACTTGGGCAACAAGAAAAACTCTCTAAGGCTCGATGATTGGGTGCTGTGCCGAATCTACAAGAAGAGCAACACGCACAGGTCTCCCATGGAGCATGACAGGGAAGATTCAATGGAAGACATGATTGGAGGGATTCCTCCTTCGATCAACGTGGGCCACATGAGTGGGAGGTATCATCTTTCAAAGATGTCCACAGGGTACAGCAGTGCATTGCTGGAAAATGACCAGAACTTGTTGGAAGGGATGATGATAGGGAACGGATCAGTGATGAACACGAGTACTGCTACTACTAATACTACACCTGGTGCCATGGCCTCAAACTCCAAGGCAGAGCTTTCTTTTGTGCCATCCATGACTCACTCTTCCAACACCTCTAAAAGAACACTCTCGTCGCTGTATTGGAATGATGAGGATGTGGCTGGCACCTCATCATCCAACAAGAGGTTCAATTTGGAAAGTGGGGACAACAATCATGGAAGTGTAGTGAGAACTGATCAAGAAAATGGCACTGCCACCTCTATTGTCACTCTGCTTAACCAGCTCCCTCAAACCCCTTCATTGCACCAACAATCAATGTTGGGATCAATAGGCGATGGACTACTTAGGACAACATATCAAATACCAGGAATGAATTGGTATGCTTAG 1110 0.4901 MESTDSSTGSQQQPQLPPGFRFHPTDEELVVHYLKKKTASVPLPVAIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLTSGGTQKVGVKKALVFYGGKPPRGIKTNWIMHEYRLADNKPNNRPPGCDLGNKKNSLRLDDWVLCRIYKKSNTHRSPMEHDREDSMEDMIGGIPPSINVGHMSGRYHLSKMSTGYSSALLENDQNLLEGMMIGNGSVMNTSTATTNTTPGAMASNSKAELSFVPSMTHSSNTSKRTLSSLYWNDEDVAGTSSSNKRFNLESGDNNHGSVVRTDQENGTATSIVTLLNQLPQTPSLHQQSMLGSIGDGLLRTTYQIPGMNWYA* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0875 369 PANTHER NAC TRANSCRIPTION FACTOR 56 1 345 - -
Pvu5g0875 369 MobiDBLite consensus disorder prediction 296 319 - -
Pvu5g0875 369 Gene3D NAC domain 25 182 IPR036093 GO:0003677|GO:0006355
Pvu5g0875 369 ProSiteProfiles NAC domain profile. 16 177 IPR003441 GO:0003677|GO:0006355
Pvu5g0875 369 MobiDBLite consensus disorder prediction 1 21 - -
Pvu5g0875 369 Pfam No apical meristem (NAM) protein 17 143 IPR003441 GO:0003677|GO:0006355
Pvu5g0875 369 SUPERFAMILY NAC domain 10 177 IPR036093 GO:0003677|GO:0006355
Pvu5g0875 369 MobiDBLite consensus disorder prediction 1 18 - -
Pvu5g0875 369 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0875 Pvu-Chr5 20514670 20517022 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0875 1 369 NAC Transcription Factor Family AT3G15510 54.404 2.09e-127 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu5g0875 NAM 3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0875 - - vra:106763825 716.457