Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0874 ATGGGAGTTCCAGAGAAAGACCCTCTTGCCCAGCTGAGTCTACCTCCTGGTTTTCGATTCTACCCCACCGACGAGGAGCTTCTCGTTCAGTATCTCTGCCGCAAGGTCGCCGGCCACCATTTCTCTCTCCCAATCATTGCTGAAATTGATTTGTACAAGTTCGACCCATGGGTTCTTCCAAGCAAGGCGATTTTCGGGGAGAAAGAGTGGTACTTTTTCAGCCCTCGAGACAGGAAGTACCCAAACGGGTCTCGACCCAACAGAGTAGCCGGGTCGGGTTATTGGAAAGCCACCGGAACCGACAAGATCATCACCACCGAAGGTAGAAAAGTGGGCATAAAAAAAGCCCTGGTTTTTTACGTTGGCAAAGCTCCGAAAGGCACCAAAACCAATTGGATCATGCACGAGTATCGGCTTCTTGATTCTTCCCGAAAGACCACTGGTACCAAGCTGGATGATTGGGTTCTGTGTCGTATATACAAGAAGAACTCGAGTGCACAGAAGGCGGTGCAAAACGGCGTCGTTTCGAGCAGGGAACACACCCAATACAGCAACGGTTCCTCGTCGTCGTCATCGTCCCATCTGGACGACGTTCTGGAATCGCTGCCAACGATCGACGAACGGTGTTTCATGATGCCACGTGCTCACACGGTGCAGCAACAGCATGAGGAGAAGGTGAACATTGAGAACCTGGGTGCGGGTGGGTTGGTGGATTGGGCGAACCCTGCGGTTCTGAATCCGGTGGGTGATTTCGTTTCGGGGAATAATCAAGTGGTGCAGGAGCATACTCAGGGGATGGTGAACTACAGCGGGTGCAATGACCTTTATGTTCCAACCTTCTGCCACGTGGAGTCTGCGCTTCCGCAAAAGATGGAGGAAGAGGTGCAAAGCGGCGTGAGAAACCAAAACAGTAATAACTCGTGGTTTCTTCAGAACGATTTTACGCAGGGGTTTCAGAACTCGGTGGACACGTGTGGGTTTAAGTTCCCGGTTCAGCCGGTGGGATTCGGGTTCAGGCATTGA 1023 0.52 MGVPEKDPLAQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLPIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRLLDSSRKTTGTKLDDWVLCRIYKKNSSAQKAVQNGVVSSREHTQYSNGSSSSSSSHLDDVLESLPTIDERCFMMPRAHTVQQQHEEKVNIENLGAGGLVDWANPAVLNPVGDFVSGNNQVVQEHTQGMVNYSGCNDLYVPTFCHVESALPQKMEEEVQSGVRNQNSNNSWFLQNDFTQGFQNSVDTCGFKFPVQPVGFGFRH* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0874 340 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Pvu5g0874 340 Gene3D NAC domain 23 168 IPR036093 GO:0003677|GO:0006355
Pvu5g0874 340 MobiDBLite consensus disorder prediction 169 196 - -
Pvu5g0874 340 PANTHER NAC DOMAIN-CONTAINING PROTEIN 55 1 318 - -
Pvu5g0874 340 SUPERFAMILY NAC domain 10 163 IPR036093 GO:0003677|GO:0006355
Pvu5g0874 340 ProSiteProfiles NAC domain profile. 14 162 IPR003441 GO:0003677|GO:0006355
Pvu5g0874 340 PANTHER NAC TRANSCRIPTION FACTOR 56 1 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0874 Pvu-Chr5 20460735 20462527 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0874 1 275 NAC Transcription Factor Family AT3G15500 61.379 1.53e-118 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu5g0874 NAM 6.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0874 - - gmx:100170718 628.632