Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0867 ATGAGCAAAGCCCTGGGAGAAGAGGAAGACGAAGAAGAACAAGACCACCAAGACCAAGACTGTTTCTACGACTCACACGACCGTTTACTCTCTCTCTCATCCTCCTGCTCATGCTCCAACTCCAACTCCGACAACGACGAAACCGAGAACGACGCCCAACACCATCCAAACGACACACTTCCCAATTTCCCCCTAACCAACAACTACGACATATGGATCTCCCAACCCTCCTCTGTCTCCGAGCGCCGCACGCGCCTGCTTCTATCACTCGGCCTCTCCTCCCTCACGCGCCAAAACCCTCACCCTGTCCCACGCGATCGCCTCTCCCCAATCCGATCCAAATCCGACAAGACAACTGCCGCCGCCGCCACCTCCTCCTCCACCGCCGCCAATCATAGGCCTCCAAACCCCAAGCCTCCGACCGAAGAGCTCTGCACTATACGCGATCTCGACAACGGGAAGGAGTTCGTGGTGAACGATTGGGAGAATCTGCGGGAGGTTGCCACCGGTCGGCACTTGACGATGGAGGAGTTCGAGATGACGGTGGGGCACTCCCCCATCGTTCAGGAGCTAATGCGGAGGCAGAATGTTGAAGAGGCTTGTGTCGATTCCAATGCGAGTGGCTCCAAGGTGAAGAAGAAAGGAGGGGGGTGGTTGAAGAGTATCAAGAGTGTGGCGAGCTCCGTCGCGGGGTACAGGGATCGACGGAGCAGTGATGAGAGGGACACCTCGTCGGAGAAGGGCGGCCGGCGGTCCAGCTCCGCCACGGACGACAGCCAAGACGCGGCGTTTCACGGTCCGGAGAGGGTGAGAGTGAAGCAGTATGGGAAGAGTTGCAAGGAGGTGACGGCGCTTTACAAGAGCCAGGAGATTCAGGCGCATAGTGGGTCTATTTGGAGCATTAAGTTCAGTTTGGATGGGAAGTATTTGGCGAGTGCTGGTGAGGATTGTGTGATTCATGTGTGGCAGGTGGTGGAGGGGGAGAGGAAGGGGGAGCTGCTGCTGCTGGATAGGGAGAAGGGGGAGGATGGGGGGAATGTGAATATGTTTTTGGTGGTGAATGGGTCGCCGGAGCCCACGGCTGCGGCAATGCTATCTCCGCTCAGGGACGTGGAGAGGAAGAGGAAGGGGAGGTCCAGTGTGAGTAGGAAGTCCTTGAGCCTCGACCAGTTTGTCGTTCCGCAGACCGTGTTTGCACTCACTGACAAACCCGTCTGCTCCTTTAAGGGACATCTGCATGATGTGCTTGACCTCTCATGGTCTAAGTCTCAGCACTTGCTCTCATCTTCAATGGACAAAACTGTGCGGCTTTGGCATCTGTCTAGCAAGTCTTGTTTGAAAATATTTTCACACAGTGACTATGTAACTTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGTGGATCTTTGGATGCTAAGGTTCGCATATGGAGCATTCCTGATCGACAAGTTGTTGATTGGACAGATCTGCATGAGATGGTCACTGCTGCTTGTTATACACCTGATGGTCAGGGTGCACTGGTTGGTTCATACAAGGGTAGCTGCCATTTATATAATACATCTGAAAATAAGTTGCAACAGAAAAGTCAGATCAACCTGCAAAACAAGAAAAAGAAATCACATCATAAGAAAATTACTGGTTTCCAGTTTGCCCCTGGTAGTTCATCAGAAGTACTTATCACATCTGCTGACTCAAGAATACGGGTGGTTGATGGTGTTGATCTGATTCATAAGTTTAAAGGCTTTCGGAATGCAACTAGCCCAATTTCAGCATCCCTCACAACAAATGGTAAATATGTTGTTGCAGCAAGTGAGGACTCCCATGTATACATCTGGAAAAATGAGGCTGATTGCAGGCCTAACAGAAGCAAAGGCGTCACTGTCACACGATCATATGAACATTTTCACTGTAAAGACGTGTCAGTGGCCATTCCCTGGCCTGGTATGGGTGATGCATGGGACATGCATGATACATTTTCTGGAGAACAACCCGAGCTTGATAACAACGCCGATGAAGTCTCATCAGCCAATCATCCTCCTACCCCTGTAGAGGAAAACTTTGTCACCGAGGGTTCAAGACCTGCATCTTGTTACAACAATAGTCCACGCCATGCAACCATTGCAAGTGCCACAAATAGTTACTTTTTTGATAGAATTTCTGCAACATGGCCAGAGGAAAAGCTTCTTCTGGCTGCAAGAAACCAAAGCCCTCGTGTCAGTATGGATTTCTCTAATGGGGCAAGTCAAAAAATGTCAGCCTGGGGTATGGTGATTGTAACTGCCGGCCTTCGAGGGGAAATTAGAACTTTCCAAAATTTTGGATTGCCACTTCGGATATAA 2349 0.5049 MSKALGEEEDEEEQDHQDQDCFYDSHDRLLSLSSSCSCSNSNSDNDETENDAQHHPNDTLPNFPLTNNYDIWISQPSSVSERRTRLLLSLGLSSLTRQNPHPVPRDRLSPIRSKSDKTTAAAATSSSTAANHRPPNPKPPTEELCTIRDLDNGKEFVVNDWENLREVATGRHLTMEEFEMTVGHSPIVQELMRRQNVEEACVDSNASGSKVKKKGGGWLKSIKSVASSVAGYRDRRSSDERDTSSEKGGRRSSSATDDSQDAAFHGPERVRVKQYGKSCKEVTALYKSQEIQAHSGSIWSIKFSLDGKYLASAGEDCVIHVWQVVEGERKGELLLLDREKGEDGGNVNMFLVVNGSPEPTAAAMLSPLRDVERKRKGRSSVSRKSLSLDQFVVPQTVFALTDKPVCSFKGHLHDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPDRQVVDWTDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSQINLQNKKKKSHHKKITGFQFAPGSSSEVLITSADSRIRVVDGVDLIHKFKGFRNATSPISASLTTNGKYVVAASEDSHVYIWKNEADCRPNRSKGVTVTRSYEHFHCKDVSVAIPWPGMGDAWDMHDTFSGEQPELDNNADEVSSANHPPTPVEENFVTEGSRPASCYNNSPRHATIASATNSYFFDRISATWPEEKLLLAARNQSPRVSMDFSNGASQKMSAWGMVIVTAGLRGEIRTFQNFGLPLRI* 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0867 782 MobiDBLite consensus disorder prediction 233 254 - -
Pvu5g0867 782 Gene3D - 371 639 IPR015943 GO:0005515
Pvu5g0867 782 MobiDBLite consensus disorder prediction 114 132 - -
Pvu5g0867 782 SUPERFAMILY WD40 repeat-like 286 618 IPR036322 GO:0005515
Pvu5g0867 782 Gene3D - 234 358 IPR015943 GO:0005515
Pvu5g0867 782 ProSiteProfiles Trp-Asp (WD) repeats profile. 291 332 IPR001680 GO:0005515
Pvu5g0867 782 MobiDBLite consensus disorder prediction 34 65 - -
Pvu5g0867 782 MobiDBLite consensus disorder prediction 666 685 - -
Pvu5g0867 782 PANTHER WD REPEAT DOMAIN 44 11 105 IPR040324 -
Pvu5g0867 782 PANTHER WD REPEAT DOMAIN 44 143 782 IPR040324 -
Pvu5g0867 782 ProSiteProfiles Trp-Asp (WD) repeats profile. 448 482 IPR001680 GO:0005515
Pvu5g0867 782 ProSiteProfiles Trp-Asp (WD) repeats profile. 408 448 IPR001680 GO:0005515
Pvu5g0867 782 PRINTS G protein beta WD-40 repeat signature 310 324 IPR020472 -
Pvu5g0867 782 PRINTS G protein beta WD-40 repeat signature 426 440 IPR020472 -
Pvu5g0867 782 PRINTS G protein beta WD-40 repeat signature 468 482 IPR020472 -
Pvu5g0867 782 SMART WD40_4 284 323 IPR001680 GO:0005515
Pvu5g0867 782 SMART WD40_4 575 616 IPR001680 GO:0005515
Pvu5g0867 782 SMART WD40_4 401 439 IPR001680 GO:0005515
Pvu5g0867 782 SMART WD40_4 484 522 IPR001680 GO:0005515
Pvu5g0867 782 SMART WD40_4 442 481 IPR001680 GO:0005515
Pvu5g0867 782 SMART WD40_4 529 574 IPR001680 GO:0005515
Pvu5g0867 782 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 408 442 - -
Pvu5g0867 782 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 448 482 - -
Pvu5g0867 782 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 11 105 - -
Pvu5g0867 782 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 143 782 - -
Pvu5g0867 782 MobiDBLite consensus disorder prediction 230 267 - -
Pvu5g0867 782 MobiDBLite consensus disorder prediction 1 22 - -
Pvu5g0867 782 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 291 324 - -
Pvu5g0867 782 MobiDBLite consensus disorder prediction 95 142 - -
Pvu5g0867 782 Pfam WD domain, G-beta repeat 290 322 IPR001680 GO:0005515
Pvu5g0867 782 Pfam WD domain, G-beta repeat 444 481 IPR001680 GO:0005515
Pvu5g0867 782 Pfam WD domain, G-beta repeat 579 616 IPR001680 GO:0005515
Pvu5g0867 782 Pfam WD domain, G-beta repeat 403 438 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0867 Pvu-Chr5 20248119 20253801 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0867 396 613 U-box Gene Family AT1G04510 27.311 1.24e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0867 K20241 - gmx:100815065 1269.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0867 5 20248119 20253801 Pvu5g0867 5 20248119 20253801 ECH