Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0865 ATGCCACCGAAGTTTGATCCCTCACAGGTGGTGGACGTGATCATTCGCGTCACCGGTGGTGAGGTGGGCACTGCGAGTTCTCTCGCACCAAAGATCGGTCCGAGACTGGATTGGAAGGGCCTCCGTATGACGATGAAGCTCACCGTTCAGAACCACCAGGCGAAGGTGACAGTGGTGCACTCCGCCGCCGCACTTGTCATCAATGCACTCAAAGAGCCCGAGAGGGACAGGAAAAAGAACAAGAATGTAAAGCACAATGGAAACATCGCCCTAGACGACGTGATTGAGATCGTGAGGGTGATGAGGTCGCACTCCATGGCAAAGGATCTCAGCAGAAGCATCAAAGAGATTCTCAGGACTTGTGTGTCTGTTGGGTGCACCGTTGATGGGAAAGACCCCAAGGATCTGCAACAGGAGATTTCCGATGGCGACATTGAGGTTCCTCTTAAATGA 453 0.5298 MPPKFDPSQVVDVIIRVTGGEVGTASSLAPKIGPRLDWKGLRMTMKLTVQNHQAKVTVVHSAAALVINALKEPERDRKKNKNVKHNGNIALDDVIEIVRVMRSHSMAKDLSRSIKEILRTCVSVGCTVDGKDPKDLQQEISDGDIEVPLK* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0865 150 Gene3D - 36 65 IPR036796 -
Pvu5g0865 150 Gene3D - 1 35 IPR036796 -
Pvu5g0865 150 Gene3D - 66 148 IPR036769 -
Pvu5g0865 150 SMART rl11c 13 129 IPR000911 GO:0003735|GO:0005840|GO:0006412
Pvu5g0865 150 PANTHER 60S RIBOSOMAL PROTEIN L12 1 149 IPR000911 GO:0003735|GO:0005840|GO:0006412
Pvu5g0865 150 SUPERFAMILY Ribosomal protein L11, C-terminal domain 62 133 IPR036769 -
Pvu5g0865 150 Pfam Ribosomal protein L11, RNA binding domain 62 128 IPR020783 GO:0003735|GO:0005840|GO:0006412
Pvu5g0865 150 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 1 71 IPR036796 -
Pvu5g0865 150 PANTHER 60S RIBOSOMAL PROTEIN L12-3-LIKE 1 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0865 Pvu-Chr5 20210462 20210957 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0865 1 148 Cytoplasmic Ribosomal Protein Gene Family AT3G53430 70.122 1.27e-79 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0865 K02870 - gmx:100527860 248.054