Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0849 ATGTCGCTGAGGAAGGTCTTTCGCTCCCGCAAATTCTCGAGATCGTTCAAGGAGGCGCCGGCGGTGGGGACCGCCGAGGGTGGGATCACCGGAAACGGGGGCGAACACGCGCACGAAAATGGGTGGTCCAACATGCTGCCGGAGATCCTCTGTGAGATCGTGCGGCGCGTCGACGCCGCCGAGGAGCAGTGGCCGAACCGCCAGAACGTAGTGTCGTGCGCGTGCGTGTGCAAGCGCTGGCGCGACATCACGCGTGAGGTCGTGCGAGAGCCTTTGCACACCGGGAAAATCACTTTCCCTTCGTGCCTTAAACAGCCCGGACCACGTGAGGTTCCCCATCAGTGTCTTATAAAGCGGAACAAGAAGACCTCAACGTTTTATCTATATCTTGCCCTATCACCATCATTCACAGATAAAGGGAAGTTTCTGCTAGCAGCTAGGAGATATAGGTGCGGTACCCATACCGAGTATATAATCTCTCTTGATGCTGATGATTTATCGCAAGGAAGCAATGCTTATGTTGGAAAGTTAAGCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCATAGTGGTGCAAGACCATCAAGTGGCAGGGCCAGTCGGCGGTTTGCCAGCAAGCAGATAAGCCCGCAAGTTCCTGCAGGTAACTTTGAGGTGGGGCAGGTATCCTACAAGTTCAACCTGTTGAAATCAAGAGGGCCACGGAGAATGGTTTGCTCTTTGAAGTCTCCCGTGACTCCTGTCACACCTACGGGTGAAAGTTCAGATAGCACATCTCTTGATGGCCATAAGATGCACGATAAAGAACACGCTGCTGCTTCTGGCTACACAATCTTGAAGAATAAAGCTCCCAGGTGGCATGAGCATTTGCAATGCTGGTGCTTGAATTTCCATGGTCGTGTGACAGTGGCCTCAGTGAAGAACTTTCAGCTGGTTGCAACAGTGGACCAAAGCCAACCTGGAGGGAAAGGAGATGAGGAAACAGTTCTTCTCCAGTTTGGTAAAGTAGGGGATGATACTTTCACCATGGATTATAGGCAGCCCTTATCTGCTTTCCAGGCTTTTGCCATTTGCTTAACTAGCTTTGGCACTAAACTTGCTTGTGAGTAA 1128 0.5142 MSLRKVFRSRKFSRSFKEAPAVGTAEGGITGNGGEHAHENGWSNMLPEILCEIVRRVDAAEEQWPNRQNVVSCACVCKRWRDITREVVREPLHTGKITFPSCLKQPGPREVPHQCLIKRNKKTSTFYLYLALSPSFTDKGKFLLAARRYRCGTHTEYIISLDADDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHSGARPSSGRASRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCSLKSPVTPVTPTGESSDSTSLDGHKMHDKEHAAASGYTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0849 375 PRINTS Tubby superfamily signature 157 173 IPR000007 -
Pvu5g0849 375 PRINTS Tubby superfamily signature 173 197 IPR000007 -
Pvu5g0849 375 PRINTS Tubby superfamily signature 222 249 IPR000007 -
Pvu5g0849 375 PRINTS Tubby superfamily signature 285 302 IPR000007 -
Pvu5g0849 375 PRINTS Tubby superfamily signature 303 319 IPR000007 -
Pvu5g0849 375 PRINTS Tubby superfamily signature 332 351 IPR000007 -
Pvu5g0849 375 PRINTS Tubby superfamily signature 353 375 IPR000007 -
Pvu5g0849 375 ProSitePatterns Tub family signature 2. 360 375 IPR018066 -
Pvu5g0849 375 MobiDBLite consensus disorder prediction 250 264 - -
Pvu5g0849 375 PANTHER TUBBY-RELATED 32 375 - -
Pvu5g0849 375 SUPERFAMILY Tubby C-terminal domain-like 93 375 IPR025659 -
Pvu5g0849 375 SUPERFAMILY F-box domain 40 85 IPR036047 GO:0005515
Pvu5g0849 375 Pfam F-box domain 42 87 IPR001810 GO:0005515
Pvu5g0849 375 Pfam Tub family 103 370 IPR000007 -
Pvu5g0849 375 Gene3D - 35 88 - -
Pvu5g0849 375 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 32 375 - -
Pvu5g0849 375 MobiDBLite consensus disorder prediction 248 269 - -
Pvu5g0849 375 Gene3D Tubby Protein; Chain A 98 375 IPR025659 -
Pvu5g0849 375 ProSitePatterns Tub family signature 1. 303 316 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0849 Pvu-Chr5 19638966 19643510 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0849 1 375 TUB Transcription Factor Family AT1G53320 72.032 0.0 554
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pvu5g0849 Tub 1.5e-102 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0849 K19600 - gmx:100808096 661.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0849 5 19638966 19643510 Pvu5g0849 5 19638966 19643510 ECH