Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu5g0845 | ATGAAGAGGAGCAGTTTGATGAAAGACTACACTCACAGTTGTGCCAGCAAGAACCCAACAAAAGACTTCACCCATGTTGCCAACTGCTACAACAAGCAGAACCAGATGGCTAAAGATTTATGGGAGTGCAGCAGCAACTCTCACAGCAATGCAGATCAGGACTATGTGAATGGCTTCCCATGGCCTCCAAGATCATACACTTGTAGTTTCTGCAGGAAGGAGTTCAAGTCTGCTCAGGCACTTGGTGGACATATGAATGTTCATAGGAGGGATAGAGCAAGGTTGAGGCAGTCACCCCCTGCTGAAGGTCAAGGCCATATGTTCAACCTTAACCTTGACCCTACTACAACAAACCCTAACAACTCAACCTCATCTTGGTCCTTATTACCATCATCTTCATCTTCACCGACTCACAAACCTGTCACTTGCACATTACCCTTGTTTGTTTCTCCCACTCCTTCTTCACCTTCTTCTGAGTTGAAGAGATGGGTTGTTGTGGATGGCATTTTGTTGAACCCTTTGACCACAAAGGCTCCAGAGCACTCTAAGTCAAAGATTCCAGAATCTTTATCAGGCGGGGTTGTAGAATACGATCATGTTTTTGCAAGAGAAGATGGGTGCAAAGTGTTGAAGAAAGGAGAGATTCTGAGGATGGACTTGGAGATAGGTTTGCCTAGAAGTTATGATTTAGATCTGGAGCTTCGTTTGGGTACTACTTACTCTTAG | 726 | 0.4477 | MKRSSLMKDYTHSCASKNPTKDFTHVANCYNKQNQMAKDLWECSSNSHSNADQDYVNGFPWPPRSYTCSFCRKEFKSAQALGGHMNVHRRDRARLRQSPPAEGQGHMFNLNLDPTTTNPNNSTSSWSLLPSSSSSPTHKPVTCTLPLFVSPTPSSPSSELKRWVVVDGILLNPLTTKAPEHSKSKIPESLSGGVVEYDHVFAREDGCKVLKKGEILRMDLEIGLPRSYDLDLELRLGTTYS* | 242 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu5g0845 | 241 | Gene3D | Classic Zinc Finger | 62 | 107 | - | - | |
Pvu5g0845 | 241 | PANTHER | C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN | 11 | 241 | - | - | |
Pvu5g0845 | 241 | SMART | c2h2final6 | 66 | 88 | IPR013087 | - | |
Pvu5g0845 | 241 | PANTHER | OS07G0101800 PROTEIN | 11 | 241 | - | - | |
Pvu5g0845 | 241 | MobiDBLite | consensus disorder prediction | 109 | 136 | - | - | |
Pvu5g0845 | 241 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 68 | 88 | IPR013087 | - | |
Pvu5g0845 | 241 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 66 | 93 | IPR013087 | - | |
Pvu5g0845 | 241 | MobiDBLite | consensus disorder prediction | 83 | 136 | - | - | |
Pvu5g0845 | 241 | Pfam | C2H2-type zinc finger | 66 | 90 | - | - | |
Pvu5g0845 | 241 | SUPERFAMILY | beta-beta-alpha zinc fingers | 63 | 92 | IPR036236 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu5g0845 | Pvu-Chr5 | 19388469 | 19389194 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pvu5g0845 | 41 | 237 | C2H2 Transcription Factor Family | AT3G23130 | 41.791 | 6.76e-35 | 122 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Pvu5g0845 | zf-C2H2_6 | 1.5e-06 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu5g0845 | - | - | var:108333719 | 390.193 |