Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0795 ATGAAGTTTTTCTTAACTACGGTCTCTGTTTGGGTACCTGCTGATTTTCTAAACAGAATGAATTTGTTTTGCTTAGTTTATCTTTCAAATATTTCATGGCTGATGGTTTGGCCTATATGGCACGGTGTTGCTTCTTGGACTTGGGATGCTCAGGATGAAACATGTGGGATCTGTAGAATGGCCTTTGATGGATGTTGTCCTGACTGTAAACTTCCAGGGGATGACTGTCCACTGATTTGGGGTGTATGCAATCATGCGTTTCATTTGCACTGTATCCTGAAATGGGTGAATTCTCAGACATCACAAGCGCATTGCCCCATGTGCCGTCGTGAATGGCAGTTTAAAGGATAA 351 0.4245 MKFFLTTVSVWVPADFLNRMNLFCLVYLSNISWLMVWPIWHGVASWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGVCNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG* 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0795 116 ProSiteProfiles Zinc finger RING-type profile. 66 109 IPR001841 -
Pvu5g0795 116 Pfam Anaphase-promoting complex subunit 11 RING-H2 finger 40 115 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Pvu5g0795 116 CDD RING-H2_APC11 52 114 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Pvu5g0795 116 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 39 115 - -
Pvu5g0795 116 SUPERFAMILY RING/U-box 40 115 - -
Pvu5g0795 116 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 116 IPR013083 -
Pvu5g0795 116 PANTHER RING BOX 39 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0795 Pvu-Chr5 15679243 15681173 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0795 66 109 C3H Transcription Factor Family AT1G72220 41.304 1.36e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0795 K03358 - gmx:100776546 190.274