Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0793 ATGAAGATTCAGTGTAACGTCTGTGAGGCTGCGGAGGCCAAGGTTCTGTGTTGTGCTGATGAGGCTGCCCTGTGTTGGGAGTGTGATGAGAAGGTTCATGCGGCTAACAAGCTTGCCAGCAAGCACCAGAGAGTTTCTCTTTCTACCTCTTCCTCTCATATGCCCAAATGTGACATTTGCCAGGAAGCATTAGGCTATTTTTTCTGTCTGGAGGATCGGGCTCTGTTCTGCAGAAAATGTGATTTGGCCATACATACAGCAAATACTTATGTCTCTGGTCATCAGAGGTTTCTTCTCACTGGTGTAAGAGTAGGCCTTGAAGCTACAGAGCCTGGCGCATCATCAACATCTTTGAAGTCAGAATCTGGGGAGAAAATTTCAGATACAAAATCCTCTTCTATCTCTAGAAAGGTTTCCACAGTGCCTCAGCCATCAGATTACAATGAATTGTTACCTATAGAAGTTGGAGGAGTTGAGGGGTTTCCACCAGCTAAGGAGTCTTTTGGTGGTGGTTCTACAGCTGGAAATATCTCACAGTGGACAATAGACGAATTTATTGGCTTAAACGAGTTCAGTCAGAATTATGAATACATGGAAGGATCATCAAGGGTGAAAATAGGACAGGGATGGGGCCAATCATTTCTTCCCAAGGCTGATGGTGGTAAGTTAGGGGATTTTGATTCTCCTTTTTTAAGATCCGGTGACGAGGAAATGGAGGAGGAGGAGGACTATTTGGAACGGGTTCCAGATTCATCATGGACAGTTCCACAGATCCCTTCCCCACCCACAGCTTCTGGGTTACACTGGCCAAAACATACTCAATATTCATCTGATAGTCTTCTGTTTGTTCCTGACATAAGGTTTTCTCAAATGCAACACTCTGAGATCAGTAGTATATTTTCTAGACGCCGGAGGCAGCTTTAA 924 0.4459 MKIQCNVCEAAEAKVLCCADEAALCWECDEKVHAANKLASKHQRVSLSTSSSHMPKCDICQEALGYFFCLEDRALFCRKCDLAIHTANTYVSGHQRFLLTGVRVGLEATEPGASSTSLKSESGEKISDTKSSSISRKVSTVPQPSDYNELLPIEVGGVEGFPPAKESFGGGSTAGNISQWTIDEFIGLNEFSQNYEYMEGSSRVKIGQGWGQSFLPKADGGKLGDFDSPFLRSGDEEMEEEEDYLERVPDSSWTVPQIPSPPTASGLHWPKHTQYSSDSLLFVPDIRFSQMQHSEISSIFSRRRRQL* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0793 307 MobiDBLite consensus disorder prediction 253 269 - -
Pvu5g0793 307 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Pvu5g0793 307 MobiDBLite consensus disorder prediction 110 143 - -
Pvu5g0793 307 MobiDBLite consensus disorder prediction 246 269 - -
Pvu5g0793 307 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 304 - -
Pvu5g0793 307 Gene3D Classic Zinc Finger 1 92 - -
Pvu5g0793 307 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 304 - -
Pvu5g0793 307 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Pvu5g0793 307 CDD Bbox1_BBX-like 5 47 - -
Pvu5g0793 307 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Pvu5g0793 307 SMART bboxneu5 52 99 IPR000315 GO:0008270
Pvu5g0793 307 SMART bboxneu5 4 47 IPR000315 GO:0008270
Pvu5g0793 307 CDD Bbox1_BBX-like 56 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0793 Pvu-Chr5 15565852 15569981 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0793 1 305 C2C2-CO-like Transcription Factor Family AT1G78600 47.112 4.08e-89 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pvu5g0793 zf-B_box 3.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0793 - - gmx:100790959 500.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0793 5 15565852 15569981 Pvu5g0793 5 15565852 15569981 ECH