Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0771 TGTCTTTGGTCTTGTGTATGTGAAGTGAAATTGATACTCTTGAAATCAAATTGTATTCTATTTCGCCTACTTTCAACAAAACCCCTTTCGTTCCAAATTAGGGTTTTGGGTTTAGACAGCATGAAGCGTTCGCGCAGAGAAAATGGCGATGACGATGGCCATGGCGATGAGCAGGGAGGTGGGAAAAATAAAATACGTGAGGGAGCAGAATCCCGCCACTCCCAGGGTTATGCGCTCGCAGTTCCTCAAACTCAAGAATCTCATCAACGCACCGCCGCGGACGACCGCGAGGACAGCGACGGAACCGCGACAGACAGCAAGACGTTCGACGACCTCGGACTGCCGGAGTGGGCGGTGAAGACGTGCCGGGAGCTCGGAATGCGGATGCCACGGCGCGTGCAGCAGCGGTGCATACCGCCTGTGCTGGAGGGCCGGCACGTGCTGGGCATCGACGAGACAGGGAGCGGGAAAACGGCAGCCTTTGCTCTTCCGATCCTGCATCGACTCGCGGAGCACCCCTTCGGCGTTTTCGCACTCGTAGTGACACCCACGCGCGAACTCGCGTTCCAGCTTGCGGAGCAGTTCCGCGCTCTGGGCTCAGCCGTGCACCTCCGCATCACGGTTGTGGTAGGTGGCATGGATATGCTCAAGCAGGCGAAGGATTTGGTTGCGAGGCCGCACCTCGTCATTGCCACTCCTGGGAGAATCCACGTCTTGCTCCGTGATAACCCTGATATTTCTGCTGTTTTCTCCAGAACCAAGTTTCTTGTCTTGGATGAAGCAGATCGAGTTCTGGATGTTTGTTTTCAGGAGGAATTGAAATTTATCTTTCAGTGCTTACCTGAAAATCGACAAAATCTGTTATTTTCTGCGACAACTACAAGTAATCTGCAAAAGTTGCGAGAACATTACCAAGATAAGATGTATGTATACGAGGCATATGAAGGCTTTAAAACAGTTCAATCACTTAAGCAACAAGCGATATTCATCCCTAAAAAGGTGAAGGATGTATATTTGATGCATATTTTGTCAAAAATGGAAGATATGGAAATTCGGTCTGCCATTGTGTTTATCTCAACTTGCAGAGATTGTCATCGTTTAAGTTTAATGCTGGAAGTGCTTGATCAAGAAGCAGCAGCTCTTTATTCATTCAAATCACAAACTCAGAGGCTTGAAGCACTTCATCAATTCAAATCAGGAAAAGTTTCTATACTGCTAGCAACTGATGTTGCCAGTCGTGGATTGGATATTGCTACAGTTGACCTTGTTATCAACTATGATGTTCCAAGGTTTCCACGGGATTATATTCATCGGGTTGGTCGTACAGCAAGAGCAGGTAGAGGGGGACTGGCTTTGAGCCTTGTCACCCAGAATGATGTTGAACTTATTCATGAAATAGAAGCGCTTATTGAGAAGCAACTTGAAATGATTGAATACAAAGAAAGTGAGGCGCTTTCTCTCATGAAAAAGGTTTTCAGTGCTAAGAATGTAGCAGAAATGAGAATGATAGATGATGGCTTTGAGGAGAAAGCTAAAGAGCGGAAAAAACAGAAACTGAAAATGCTTGCAGAGAAAGGATTGTTGAAGAAAAATAAAAGGAGAAAACAAAGTAAAGAATTTTCAGAGGAAGGGAAAGAGGTTTTCGGTGCTAAGAATGTCGAGGAAATGAAGACAAAAACTGAAAATACTAAAAGGTTTGTTAAAGAAAAAAAAGTTAAAAGAAAGAAGTAA 1731 0.4541 CLWSCVCEVKLILLKSNCILFRLLSTKPLSFQIRVLGLDSMKRSRRENGDDDGHGDEQGGGKNKIREGAESRHSQGYALAVPQTQESHQRTAADDREDSDGTATDSKTFDDLGLPEWAVKTCRELGMRMPRRVQQRCIPPVLEGRHVLGIDETGSGKTAAFALPILHRLAEHPFGVFALVVTPTRELAFQLAEQFRALGSAVHLRITVVVGGMDMLKQAKDLVARPHLVIATPGRIHVLLRDNPDISAVFSRTKFLVLDEADRVLDVCFQEELKFIFQCLPENRQNLLFSATTTSNLQKLREHYQDKMYVYEAYEGFKTVQSLKQQAIFIPKKVKDVYLMHILSKMEDMEIRSAIVFISTCRDCHRLSLMLEVLDQEAAALYSFKSQTQRLEALHQFKSGKVSILLATDVASRGLDIATVDLVINYDVPRFPRDYIHRVGRTARAGRGGLALSLVTQNDVELIHEIEALIEKQLEMIEYKESEALSLMKKVFSAKNVAEMRMIDDGFEEKAKERKKQKLKMLAEKGLLKKNKRRKQSKEFSEEGKEVFGAKNVEEMKTKTENTKRFVKEKKVKRKK* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0771 576 Pfam Helicase conserved C-terminal domain 341 446 IPR001650 -
Pvu5g0771 576 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 138 311 IPR014001 -
Pvu5g0771 576 Pfam DEAD/DEAH box helicase 132 300 IPR011545 GO:0003676|GO:0005524
Pvu5g0771 576 Gene3D - 73 311 IPR027417 -
Pvu5g0771 576 CDD SF2_C_DEAD 323 455 - -
Pvu5g0771 576 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 338 485 IPR001650 -
Pvu5g0771 576 MobiDBLite consensus disorder prediction 526 545 - -
Pvu5g0771 576 Gene3D - 318 491 IPR027417 -
Pvu5g0771 576 PANTHER RNA HELICASE 106 537 - -
Pvu5g0771 576 MobiDBLite consensus disorder prediction 44 108 - -
Pvu5g0771 576 PANTHER ATP-DEPENDENT RNA HELICASE DDX49-RELATED 106 537 - -
Pvu5g0771 576 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 466 IPR027417 -
Pvu5g0771 576 MobiDBLite consensus disorder prediction 44 71 - -
Pvu5g0771 576 CDD DEADc_DDX49 109 312 - -
Pvu5g0771 576 SMART helicmild6 365 446 IPR001650 -
Pvu5g0771 576 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 107 135 IPR014014 GO:0003724
Pvu5g0771 576 SMART ultradead3 126 326 IPR014001 -
Pvu5g0771 576 MobiDBLite consensus disorder prediction 89 105 - -
Pvu5g0771 576 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 257 265 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0771 Pvu-Chr5 13244748 13253273 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0771 107 459 Eukaryotic Initiation Factors Gene Family AT3G13920 32.295 1.26e-53 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0771 K14778 - gmx:100798597 773.852