Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0770 ATGGACTCCTCCTACCACCACTTGGACCACACTGAAGCTCACCTGCCACCTGGCTTTAGGTTCCACCCCACTGACGAGGAGCTCATAACGTACTACCTTCTCAAAAAGGTTTTAGACAGCACCTTCACTGGTAGAGCCATAGCTGAAGTAGACCTGAACAAGAGTGAACCATGGGAGCTCCCAGAGAAAGCTAAAATGGGTGAGAAAGAGTGGTACTTCTTCAGCTTACGTGACAGGAAGTACCCAACTGGGTTACGAACCAATAGGGCTACTGAAGCTGGTTACTGGAAAGCCACTGGGAAAGATAGAGAGATTTACAGCTCCAAGACCTCTTCTTTGGTCGGGATGAAGAAAACCTTGGTTTTCTACCGTGGTCGAGCTCCCAAGGGGGAGAAAAGTAACTGGGTCATGCATGAGTATCGCCTTGAAGGCAAATTTGCTTACCACTACCTTTCTCGCAACTCCAAGGATGAGTGGGTCATATCGCGCGTGTTCCAAAAGAGCAACACATCCAACGGCGGCTCCGCCATGTCTGCTTCAAGTGGCTCCAAGAAAACAAGAATGAATACCACCAACAGCTCTCTCTGCCCAGAACCAAGTTCACCCTCTTCAGTTTACCTTCCGCCTCTTCTAGACTCTTCACCGTACGCCAACACAACCACCGCGGTCAACTTCACTGGCCGTAACAACTGTTCCTATGACAGCACCACCAAAAAGGAGCACGTGTCCTGTTTCTCCACAATCGCTGCAGCCACCGCTGCTGTTGTCTCCCCAAACAACTTCACCAATGCAAGCTTCGACCTTCCACCATCTCAGTCTCTTGGAACGGATCCCTTCGCTAGGTTTCAGAGAAACGTTGGCGTATCTGCCTTCCCAAGTTTGAGGTCACTGCAAGACAACCTCCAGTTACCGTTCTTTTTTCCTCCAGCAGCACAGCCCTTCTCCGTCAGTGGCACCGGTGATCTCCTCTGGCCGATGCCGGAGGAGCAAAGGCTGGTTGATGCGGCATCCAACGTTCCACTGGGGGTGTCGGAGCTTGATTGTATGTGGGGATACTAG 1059 0.5127 MDSSYHHLDHTEAHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKSEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTSSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRNSKDEWVISRVFQKSNTSNGGSAMSASSGSKKTRMNTTNSSLCPEPSSPSSVYLPPLLDSSPYANTTTAVNFTGRNNCSYDSTTKKEHVSCFSTIAAATAAVVSPNNFTNASFDLPPSQSLGTDPFARFQRNVGVSAFPSLRSLQDNLQLPFFFPPAAQPFSVSGTGDLLWPMPEEQRLVDAASNVPLGVSELDCMWGY* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0770 352 MobiDBLite consensus disorder prediction 170 203 - -
Pvu5g0770 352 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-LIKE 6 348 - -
Pvu5g0770 352 MobiDBLite consensus disorder prediction 170 201 - -
Pvu5g0770 352 Gene3D NAC domain 24 172 IPR036093 GO:0003677|GO:0006355
Pvu5g0770 352 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Pvu5g0770 352 ProSiteProfiles NAC domain profile. 15 167 IPR003441 GO:0003677|GO:0006355
Pvu5g0770 352 SUPERFAMILY NAC domain 11 167 IPR036093 GO:0003677|GO:0006355
Pvu5g0770 352 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0770 Pvu-Chr5 13215449 13218158 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0770 1 352 NAC Transcription Factor Family AT5G53950 53.061 8.68e-120 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu5g0770 NAM 1.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0770 - - gmx:100805987 570.466