LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu5g0744	ATGGGTGGCATGTGTTGCAAGCCCTCCGCCATTGAAGACAGTAAGGAGAGTCCAAGGGAGCGTTTATCGAGCAAGGCTGTGTCGGACTTGCGTGTATCAAGGGGAACTTCATCGAGGAGGGAGGAAGTGTTTCGTGTAAAAGATAGATATGATAACAATGAGGGAAGAACTGCATTGATTGATAAGCAAGGGAATGGTTCTGTTAGAGTGCAAGGTGATAGTATTGAAAGGAAGAGGGAGAAAATGGAATATGCTGTTGCTCAACATCCGGGGATTGGTAGTGTTCCCAAAGCCATGGAAGGTGAGCAGGTTGCAGCTGGATGGCCCTCATGGCTGGCAGCAGTGGCTGGAGAGGCTATCAGGGGATGGCTGCCACGGCGTGCAGATTCTTTTGAGAAGTTGGATAAAATTGGACAGGGAACTTATAGCAATGTTTATAGAGCTCGTGATCTTGAACAGAAAAAGATTGTTGCTTTGAAAAAAGTGAGGTTTGATAATCTTGAGCCTGAGAGTGTTCGCTTCATGGCAAGGGAAATTCACATTCTGCGTAGGCTTGATCATCCAAATGTCATAAAATTGGAAGGCTTGGTTACATCAAGGATGTCTTGCAGCTTATACCTTGTTTTTGAGTACATGGAGCATGACTTGGCTGGGCTTGCATCACATCCTGGACTGAAGTTTACTGAAGCTCAGGTTAAATGTTACATGCAGCAACTTTTACGTGGACTTGATCACTGCCACAGCTGTGGTGTACTGCACCGTGACATTAAGGGTTCCAATCTTTTGATTGACAACAATGGGATATTGAAAATTGCAGACTTTGGTTTGGCAAGCTTTTTTGATCCTAGTCAAGCTCAGCCATTGACGAGCCGAGTTGTCACTCTTTGGTATAGGCCTCCTGAGCTTTTGCTTGGAGCCACTTATTATGGCACTGCTGTAGACTTATGGAGTACAGGTTGCATACTTGCTGAGCTGTATGCTGGGAAGCCTATAATGCCTGGAAGAACTGAGGTGGAGCAATTACATAAAATTTTTAAACTTTGTGGTTCACCTTCTGAGGACTATTGGAGAAAATCAAAGTTGCCTCATGCAACAATATTTAAGCCTCAACAGCCCTATAGACGATGTGTTTCTGAAACATTCAAGGACTTTCCTACACCTGCAATAGAATTGATAGAGACTCTTTTATCCATAGATCCTGCTGATCGTGGAACTTCAGCATCTGCGTTGAGTAGTGAGTTCTTCTCAACAAAGCCTCTACCTTGTGATCCCTCAAGCTTACCAAAGTATCCTCCTAGCAAAGAATTTGATGCCAAAGTACGGGATGAAGAAGCTAGAAGACAAGGAGGAGCAGGAGTCAAGGGCCAGAGGCATGATCCTGAGAGAAAAGGAACAAGAGAATCACGAGCCATTCCTGCACCTGATGCCAATGCTGAACTGGTCTTGTCAATGCAGAAGAGGCAAGGGCAAGCTAATTCTCAGAGCAGGAGTGAGAAGTTTAACCCTCATCCTGAAGAAGTTGCTTCTGGATTTCCCATTGATCCCCCTAGACCATCACAAGCTGCAGCAGTAAGTGTGGATCCCCCTGTTCATCAACATAAAAGAGCCTCCCATTCAGGTCCACTGACTCACCGTGCAGCATGGGCAAAAGCTGGCAAGAACCAGGACGATGCTCCCAAGATTTCAATGGGAGGAGACTTATCAACAATATCAGGCTTAGTTGCGGCAAGTAGGAGTATGTTGTCTGATGATCGCAGAGAAAGGTCTGGATCATCACAAGCAGAGGCTCAAAAACTGATAAGCAGGTTCCCAGGATCCTTCAAGGAGGCCTCTGAGTCAATGTTGCAACAGGATCAGAAGCATCATGCACATGCTCCTCAAAAGGAAGAAGGAAGAGCCAGCAGCAACAAAGACTCAAGTCTTGTTGGTTATGGCTCCAAGGGTCATAAAATTCATTATTCTGGCCCTCTGCTAGTTCCATCAAGCAACATGGATCAGATGTTGAAGGACCATGACCGCCAAATCCAAGAGGCGGTTCGAAGATCAAGATTAGACAAGGCAAAGATGAGAAGACTCCAAGCTGAGGGAAACCAGATAACCAATTCATTATTTGTTTCTGGTCGTTGA	2127	0.4537	MGGMCCKPSAIEDSKESPRERLSSKAVSDLRVSRGTSSRREEVFRVKDRYDNNEGRTALIDKQGNGSVRVQGDSIERKREKMEYAVAQHPGIGSVPKAMEGEQVAAGWPSWLAAVAGEAIRGWLPRRADSFEKLDKIGQGTYSNVYRARDLEQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKFTEAQVKCYMQQLLRGLDHCHSCGVLHRDIKGSNLLIDNNGILKIADFGLASFFDPSQAQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVSETFKDFPTPAIELIETLLSIDPADRGTSASALSSEFFSTKPLPCDPSSLPKYPPSKEFDAKVRDEEARRQGGAGVKGQRHDPERKGTRESRAIPAPDANAELVLSMQKRQGQANSQSRSEKFNPHPEEVASGFPIDPPRPSQAAAVSVDPPVHQHKRASHSGPLTHRAAWAKAGKNQDDAPKISMGGDLSTISGLVAASRSMLSDDRRERSGSSQAEAQKLISRFPGSFKEASESMLQQDQKHHAHAPQKEEGRASSNKDSSLVGYGSKGHKIHYSGPLLVPSSNMDQMLKDHDRQIQEAVRRSRLDKAKMRRLQAEGNQITNSLFVSGR*	709

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu5g0744	708	MobiDBLite	consensus disorder prediction	421	542	-	-
	Pvu5g0744	708	PANTHER	CELL DIVISION PROTEIN KINASE	1	690	-	-
	Pvu5g0744	708	MobiDBLite	consensus disorder prediction	12	27	-	-
	Pvu5g0744	708	MobiDBLite	consensus disorder prediction	434	469	-	-
	Pvu5g0744	708	Gene3D	Phosphorylase Kinase; domain 1	118	213	-	-
	Pvu5g0744	708	MobiDBLite	consensus disorder prediction	483	498	-	-
	Pvu5g0744	708	SMART	serkin_6	131	415	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu5g0744	708	PANTHER	CYCLIN-DEPENDENT KINASE	1	690	-	-
	Pvu5g0744	708	CDD	STKc_CDK9_like	131	415	-	-
	Pvu5g0744	708	ProSitePatterns	Protein kinases ATP-binding region signature.	137	160	IPR017441	GO:0005524
	Pvu5g0744	708	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	251	263	IPR008271	GO:0004672\|GO:0006468
	Pvu5g0744	708	ProSiteProfiles	Protein kinase domain profile.	131	415	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu5g0744	708	SUPERFAMILY	Protein kinase-like (PK-like)	125	423	IPR011009	-
	Pvu5g0744	708	MobiDBLite	consensus disorder prediction	577	647	-	-
	Pvu5g0744	708	MobiDBLite	consensus disorder prediction	614	635	-	-
	Pvu5g0744	708	Gene3D	Transferase(Phosphotransferase) domain 1	214	454	-	-
	Pvu5g0744	708	MobiDBLite	consensus disorder prediction	1	39	-	-
	Pvu5g0744	708	Pfam	Protein kinase domain	131	415	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu5g0744	Pvu-Chr5	12136229	12143812	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu5g0744	123	466	Core Cell Cycle Gene Families	AT5G10270	51.944	1.07e-119	366

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Pvu5g0744		Pkinase	6.4e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu5g0744	-		-	gmx:100792173	1354.73