Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pvu5g0739 | ATGGAGAAGAAATCATTTGCTGGATTATGCTTCCTCTTCCTTGTTCTCTTTGTTGCTCAAGAATGTGTGTTGCAGACTGAGGCAAAGACTTGCGAGAACCTGGCTGATACATTCAGGGGTCCATGCTTCGCCACTGGCAACTGCGATGATCACTGCAAGAACAAAGAACACTTGCTGCGTGGCAGATGCAGGGATGATTTCCGCTGTTGGTGCACAAGAAACTGTTAA | 228 | 0.4693 | MEKKSFAGLCFLFLVLFVAQECVLQTEAKTCENLADTFRGPCFATGNCDDHCKNKEHLLRGRCRDDFRCWCTRNC* | 76 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pvu5g0739 | 75 | ProSitePatterns | Gamma-thionins family signature. | 29 | 52 | IPR008176 | GO:0006952 | |
| Pvu5g0739 | 75 | PANTHER | DEFENSIN | 1 | 75 | - | - | |
| Pvu5g0739 | 75 | SMART | gth_4 | 30 | 75 | IPR003614 | GO:0006952 | |
| Pvu5g0739 | 75 | SUPERFAMILY | Scorpion toxin-like | 28 | 75 | IPR036574 | - | |
| Pvu5g0739 | 75 | Gene3D | - | 29 | 75 | IPR036574 | - | |
| Pvu5g0739 | 75 | Pfam | Gamma-thionin family | 29 | 75 | - | - | |
| Pvu5g0739 | 75 | PANTHER | DEFENSIN-LIKE PROTEIN 1 | 1 | 75 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pvu5g0739 | Pvu-Chr5 | 11939073 | 11939803 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pvu5g0739 | 11 | 75 | Plant Defensins Gene Families | AT2G02130 | 40.909 | 9.43e-11 | 50.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pvu5g0739 | - | - | pvu:PHAVU_005G071400g | 171.014 |