Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0732 ATGGCCGAGCTCACAGAACTGTTCCCATTGGGCCAACAATTCGATGGTTTGATACGCATGTGTGTGCAGGCCATCTCTTATGATCTTCCAACTCTCACCACTGTTCTATTCGTACTCACATTGTTGTTCTTCATCCTACACCGAATTCTCAACGGGATGTTCTTCTGGGTAATGGAAATGGAGTCAAATGAACATGATCTTGAAGAAGGAAGCACTCATTTGAGAAACTACGGAGAGCCCTCTCAGCATGTTACCATCTTTCATGCTCTTGTTCACACCAATTTGCATGCTTGGACATTGGTGACTGCATTTGAAAGAGTTCATTCCAAAATAGGGCAAAATCTTAGAGCTTCCAAGAAATTACCCCCCTTGGTAAACTATGGAATGCATGGTAAAGCAAGAAGTTGTGGGGAATGTGCCATTTGCTTGGAAGAATTCAGAGTGAATCAATTATGTCAAGTTTTTCCTGTGTGCAAACACCTTTTTCATTCGGATTGCATAGACCACTGGTTGCAGAAGAAATTAAACTGCCCCATATGTCGTGGTTCTGTATAG 555 0.4234 MAELTELFPLGQQFDGLIRMCVQAISYDLPTLTTVLFVLTLLFFILHRILNGMFFWVMEMESNEHDLEEGSTHLRNYGEPSQHVTIFHALVHTNLHAWTLVTAFERVHSKIGQNLRASKKLPPLVNYGMHGKARSCGECAICLEEFRVNQLCQVFPVCKHLFHSDCIDHWLQKKLNCPICRGSV* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0732 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 184 IPR013083 -
Pvu5g0732 184 Pfam Ring finger domain 138 181 IPR001841 -
Pvu5g0732 184 PANTHER RING FINGER DOMAIN-CONTAINING 16 184 - -
Pvu5g0732 184 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Pvu5g0732 184 SMART ring_2 139 180 IPR001841 -
Pvu5g0732 184 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 16 184 - -
Pvu5g0732 184 SUPERFAMILY RING/U-box 138 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0732 Pvu-Chr5 11640807 11641361 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0732 24 181 C3H Transcription Factor Family AT1G53010 32.317 2.61e-19 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0732 - - pvu:PHAVU_005G070700g 373.244