Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0702 ATGATTAACAATGGAGTCTGCACTCTCCGCACCTGCTTCCGTTTCCCGGAGAGGTCGCTATTCCGACCACGGCAGTGCTTGTTCACTTCCCGGCGACAGTTTCTGGTGACTGCATCCGAAAGGAAGAAGAAAGAGAAGGTGATTGTGATTTCTGGACCCACCGGTTCGGGCAAGAGCCGCCTGGCATTGGAACTAGCTAAGCGCCTAAACGGCGAAATCGTCAGTGCTGATTCCGTTCAGGTGTATCGGGGGCTTGATGTGGGATCTGCAAAGCCTTCCCCAGATGAAAGAAAGGAGGTACCGCATCATCTGGTTGACATACTGCACCCATCTGAAGATTATTCTGTTGGGCAGTTTTTTGAGGATGCAAGGCATGCTACAAGATGTATTCTTGACAATGGCCGTGTTCCCATAGTTGTTGGAGGCACTGGATTGTATTTAAGATGGTTCATATATGGAAAGCCAGATGTACCTAAAGCTTCTCCAGAGATTATATCTGAAGTAAATCAAGAATTAGCTGAACTACAGAGGAGAGATGACTGGGATACAGCTGTACAGTTGGTGGTAAAAGCAGGTGATCCAAAGGCTCAATTTCTAGCAGTGAATGATTGGTATCGATTACGGCGTAGCCTAGAGATTATTAAGTCTAGTGGATCACCTCCTTCTGCGTTTCGGGTACCATATGATTCTTTCAGGGAACAGAGTGAATGTAGCGTTGCTGAGGTTTCGGAGTCATCTGATATGAGCACTGGAATGGAAGAAACCAGCTCATCAGAGTTAGACTATGAGTTTATGTGCTTTTTCCTTTCTAGTCATAGACTTGACCTCTATAAATCAATTGATTATCGGTGTGAAGATATGCTTTTAGGAAGGGATGGGATTTTGTCCGAGGCTCAGTGGCTTCTTGATACGGGTCTTCATCCAAACTCCAATTCTGCAACTAAAGCAATTGGTTACAGACAAGCCATGGAGTACTTACAAAGTTGCAGAGAGCACGGGGGTCAGAGTTCTGTTGCAGAATTTTACAAATTCTTGTTTGAATTTCAAAAAGCATCACGGAATTTCGCAAAAAGGCAGTTGACATGGTTTCGTAATGAAGGCATATACCAGTGGCTTGATGCTTCTAAACCTCTGGAAACCATTCTCAGTTTCATTAATGGCGCATACCATGACTGGAATGGAAGTCTTCTTGTGCCTGAACACCTAAGAATGTCGAGAGATATTTCTAATCGCCGAGAAGCTACACAACTAAAGTCTTATCGCACCAAAAATAGGCATTTTGTGAAGGGGGAAGATTGTTCTCATATTCTCAACTGGATAAGCAAGACACAAAGGTGA 1338 0.4425 MINNGVCTLRTCFRFPERSLFRPRQCLFTSRRQFLVTASERKKKEKVIVISGPTGSGKSRLALELAKRLNGEIVSADSVQVYRGLDVGSAKPSPDERKEVPHHLVDILHPSEDYSVGQFFEDARHATRCILDNGRVPIVVGGTGLYLRWFIYGKPDVPKASPEIISEVNQELAELQRRDDWDTAVQLVVKAGDPKAQFLAVNDWYRLRRSLEIIKSSGSPPSAFRVPYDSFREQSECSVAEVSESSDMSTGMEETSSSELDYEFMCFFLSSHRLDLYKSIDYRCEDMLLGRDGILSEAQWLLDTGLHPNSNSATKAIGYRQAMEYLQSCREHGGQSSVAEFYKFLFEFQKASRNFAKRQLTWFRNEGIYQWLDASKPLETILSFINGAYHDWNGSLLVPEHLRMSRDISNRREATQLKSYRTKNRHFVKGEDCSHILNWISKTQR* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0702 445 Gene3D - 44 435 IPR027417 -
Pvu5g0702 445 Hamap tRNA dimethylallyltransferase [miaA]. 47 383 IPR018022 GO:0008033
Pvu5g0702 445 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 9 37 444 - -
Pvu5g0702 445 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 176 IPR027417 -
Pvu5g0702 445 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 354 IPR027417 -
Pvu5g0702 445 Pfam IPP transferase 80 366 - -
Pvu5g0702 445 TIGRFAM miaA: tRNA dimethylallyltransferase 47 224 IPR018022 GO:0008033
Pvu5g0702 445 Gene3D - 155 226 - -
Pvu5g0702 445 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 37 444 IPR039657 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0702 Pvu-Chr5 10589974 10596299 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0702 50 357 C2H2 Transcription Factor Family AT2G27760 25.545 1.24e-20 92.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0702 5 10589974 10596299 Pvu5g0702 5 10589974 10596299 ECH