Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0697 ATGTTGATCAGCAACGAGGTAGAAGATTTGTTTGATGATAACTTTGAAGGATCTAACGAAGAAAGACAGATTTTTTCAGAGGTCTTTTCTGGTGATGACATTTTTCAGTCTACTCAGAAGTGTCTTGTTCCTGGAGTTATCAGCTTTGAACATGAATCTGCTAAAAACACATTTAAATCATTCTGCTCTAGTAACGAAAACTCAGTTGCATTGGATCCCTCGTCATCTAGACTTACACACCCTGAAGAGGAGAACTTTAATGTAATTCAGCATTCCAAAGAGGCTGCTCTGGGATGTGTGCCAGAGAGTTTGATTTGTGAAGACCAGAATGACGAGGATGTGAATGTCAAACGAATGAAATTTTCTCTGCATGAACTTGCTTGTAGTAGATCTGATTCAGAAAAAAATTTGAGTTCATCACGACTTTCAAAAGTAGCAGTTTCTAACCTGTCTTCTGTTGCTACAGGCTGTAATAGTGAACCAATTGCATTTCGTTTGGTTGAATCATCCAAAGATGGTGTGATATCCAGTTGTTATCTATTGAACCATAACAATTTAAATAAACAAGCTGTTAAGGATGATGTAGATGTTACAAATTTTAACACAGCAACAGCAGACAGACATATTGCAAAAGAAGTGTCTGTAAGTAAAGCAGCTGCTTCTCCTGTTTCCCAGGAAAGCTTTGCGAGCAGGCTTGTAATTACAAGTCCGTCAATCACTGTTGTGAAGAAGGCTGGGTCTCCTTTAAATCCTGAGGAAATGCCGGAATCTACTAATGGGGACATCTCAAATTCACCCTCAATGCTACAGGAAGAGGACCCTCGTACTATTCTGCAGTTTCAGATTGTTCAGTTGCTTACGATGGCAGGGTGGACTATTGAGAAGCGTCAACGGCCTAGCAGACGTTATCCAGAGTCAGTTTACAGGACACCAGAGGGAAAGCCTATTCGGGAATTTACAAAGGCTTGGAGAATATGTGGTGAGCTATTGTCTGTTGACAAATGCAATTTAATGTGCAGAGATTATAAGGAATGGACTGATATTAGTCAATTCTGGTCTGATCTATCCAGTGCACTGATAAATGTTGAAAAAACAAAGATGCAGTCAGAAGACCCTGATGCTATGTTGGCTTATCGATGGTGGCTTTTGGATCCGTTTGTAGTTGTTATATTTGTTGATAGAAAGATTGGTGCCCTGAAAAAGGGAGAGGTAGTGAAAGCAACTTGGACTTTAGTTTCTAGTAAGTATAAGGTGGCATGTGCTCCCATTGATTCGAGCTCTGGAAATTCGAATCAGGTACCTGGAGGGTCTAATGTAAATGCTGTTCACCAAGCCAAAATTAGAAGTTCTAGAAGTCTTGATAAGCAGAGTTCAGATGGGCATGTGCCAATGGACACGTCAGAAGAAAATAACGCTTCTGGTGTGAGCTATGGCCTGGTTAATTCTCATGGCTCAAGGACTGTGCAACAGTCTGAATGTAGTGAGGAAGAGGGTGGGAAAATCTTAGTAGATTCTGCATTTGGGAAAGATAGCACATATTCTGTTTCTAATGTTATTCTTAGAAAGAAAATGCGAAGGAAGTGCAAAAGGGTATCTGAAATTAAAATGAGTATGTTCTGCCATGGTGACATGCTGGGCTCAACTGTCACTGATCAGGTGCAGTCACTAGATGGTGAAGCATGTGGTTTGGAAGAGGTCCAGAATTATCTAGTTGACAATGCTGGAAAGAAAAGAAGCTGCAGAAAGTTATCATCTTTCAGTGCAATTCAGAGAAATACCAGGAAAACAAACGGCTCCATAACTGGAACGGATAGGTCTAACAGATGCCATATTAAAGATGATGATTTATTGGTGTCTGCAATATTCAGGAATAAGGACTTCGGCCCAAAGGCAATCCGGGGAAGTTCTAGAGCTAAATCCTGCAAATCAAGGGGCCAGAGAAAGCTTAAAAGCCAAAAGGGTCGTTGCAGGTTGCTGCCAAGGAACCCCTGTAGTGCAGGGAAGTACAATAAGGACTGTAATAGGTCTTATTTGGGTTCAAGGACAATATTGTCCTGGTTAATTGATAATGGGGTCATATCTTTAAATGATGTGATTCAATACCGAAATACTAAGGATAATGTTGTTATTAAGGATGGCAGGATCACCAAAGATGGTATTATATGTATATGTTGTGGTAAGGTGCTTACATTATCTGAGTTCAAGTTGCATGCTGGGTTTACATTGAATCGCCCCTGCGTAAATATTTTTATGGAATCTGGCGAGCCCTTTACATTGTGCCTCCTTCAAGCTTGGTCAGCTGAATACAAAGCCAGGAAAAGTCTGAATCTAGTTGTGCAGACTGATGATAATGACAAAAATGATGATTCATGCGGGTTGTGTGGTGAAGGGGGTGAGCTGATATGTTGTGATAATTGTCCATCTACTTTCCACGTAGCTTGTTTGTCCACTCAGGATATCCCAGATGGTGACTGGTACTGTGCAAACTGCACTTGTAGGATATGTGGAAATTTGGTTATTGATAAAGACACTTCAGATCTGCATGATTTGTTACAATGTTCACAGTGTGAACATAAATATCACGAGACATGCCTTAAAGTAAGAGAAACACCAGAAGGAGCAGTCTCGGACATTTGGTTTTGTGGTCAGAGTTGTCAGGAG 2661 0.4062 MLISNEVEDLFDDNFEGSNEERQIFSEVFSGDDIFQSTQKCLVPGVISFEHESAKNTFKSFCSSNENSVALDPSSSRLTHPEEENFNVIQHSKEAALGCVPESLICEDQNDEDVNVKRMKFSLHELACSRSDSEKNLSSSRLSKVAVSNLSSVATGCNSEPIAFRLVESSKDGVISSCYLLNHNNLNKQAVKDDVDVTNFNTATADRHIAKEVSVSKAAASPVSQESFASRLVITSPSITVVKKAGSPLNPEEMPESTNGDISNSPSMLQEEDPRTILQFQIVQLLTMAGWTIEKRQRPSRRYPESVYRTPEGKPIREFTKAWRICGELLSVDKCNLMCRDYKEWTDISQFWSDLSSALINVEKTKMQSEDPDAMLAYRWWLLDPFVVVIFVDRKIGALKKGEVVKATWTLVSSKYKVACAPIDSSSGNSNQVPGGSNVNAVHQAKIRSSRSLDKQSSDGHVPMDTSEENNASGVSYGLVNSHGSRTVQQSECSEEEGGKILVDSAFGKDSTYSVSNVILRKKMRRKCKRVSEIKMSMFCHGDMLGSTVTDQVQSLDGEACGLEEVQNYLVDNAGKKRSCRKLSSFSAIQRNTRKTNGSITGTDRSNRCHIKDDDLLVSAIFRNKDFGPKAIRGSSRAKSCKSRGQRKLKSQKGRCRLLPRNPCSAGKYNKDCNRSYLGSRTILSWLIDNGVISLNDVIQYRNTKDNVVIKDGRITKDGIICICCGKVLTLSEFKLHAGFTLNRPCVNIFMESGEPFTLCLLQAWSAEYKARKSLNLVVQTDDNDKNDDSCGLCGEGGELICCDNCPSTFHVACLSTQDIPDGDWYCANCTCRICGNLVIDKDTSDLHDLLQCSQCEHKYHETCLKVRETPEGAVSDIWFCGQSCQE 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0697 887 MobiDBLite consensus disorder prediction 456 478 - -
Pvu5g0697 887 PANTHER PHD FINGER PROTEIN 12 459 887 IPR042163 GO:0003714|GO:0045892
Pvu5g0697 887 PANTHER PHD FINGER PROTEIN 12 1 460 IPR042163 GO:0003714|GO:0045892
Pvu5g0697 887 SMART PHD_3 790 831 IPR001965 -
Pvu5g0697 887 SMART PHD_3 832 886 IPR001965 -
Pvu5g0697 887 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 781 831 IPR013083 -
Pvu5g0697 887 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 832 887 IPR013083 -
Pvu5g0697 887 SUPERFAMILY FYVE/PHD zinc finger 831 882 IPR011011 -
Pvu5g0697 887 ProSiteProfiles Zinc finger PHD-type profile. 788 833 IPR019787 -
Pvu5g0697 887 MobiDBLite consensus disorder prediction 446 478 - -
Pvu5g0697 887 Pfam PHD-finger 791 832 IPR019787 -
Pvu5g0697 887 MobiDBLite consensus disorder prediction 244 268 - -
Pvu5g0697 887 SUPERFAMILY FYVE/PHD zinc finger 777 832 IPR011011 -
Pvu5g0697 887 MobiDBLite consensus disorder prediction 252 268 - -
Pvu5g0697 887 Pfam Tify domain binding domain 713 763 IPR032308 -
Pvu5g0697 887 PANTHER INCREASED DNA METHYLATION 1 459 887 - -
Pvu5g0697 887 PANTHER INCREASED DNA METHYLATION 1 1 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0697 Pvu-Chr5 10476018 10482648 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0697 1 887 PHD Transcription Factor Family AT3G14980 35.437 3.08e-146 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pvu5g0697 TDBD 8.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0697 - - pvu:PHAVU_005G0673000 1774.21