Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0620 ATGCAGATCTTTGTTAAGACTTTGACCGGAAAGACCATCACGCTGGAGGTCGAGAGCAGCGACACCATTGACAACGTCAAAGCCAAGATCCAGGACAAGGAAGGTATCCCTCCTGATCAGCAGAGGTTGATTTTTGCTGGTAAGCAACTGGAAGATGGTCGCACACTTGCTGATTATAACATACAAAAGGAATCAACCCTTCACTTGGTTTTGAGGCTCAGGGGAGGAACCATGATTAAAGTGAAGACTCTGACTGGAAAAGAAATTGAAATCGACATTGAGCCAACTGATACGATTGATCGGATCAAGGAACGAGTAGAAGAAAAGGAAGGAATTCCACCTGTGCAGCAGAGACTCATATATGCAGGTAAGCAGCTTGCTGATGACAAAACAGCTAAAGAGTACAACATTGAGGGTGGTTCAGTACTTCATTTGGTGCTTGCATTGAGGGGTGGTATTTATTAA 465 0.4409 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKEYNIEGGSVLHLVLALRGGIY* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0620 154 PANTHER - 1 153 - -
Pvu5g0620 154 PANTHER UBIQUITIN 1 153 - -
Pvu5g0620 154 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Pvu5g0620 154 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Pvu5g0620 154 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Pvu5g0620 154 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Pvu5g0620 154 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Pvu5g0620 154 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Pvu5g0620 154 SUPERFAMILY Ubiquitin-like 78 152 IPR029071 -
Pvu5g0620 154 PRINTS Ubiquitin signature 11 31 IPR019956 -
Pvu5g0620 154 PRINTS Ubiquitin signature 32 52 IPR019956 -
Pvu5g0620 154 PRINTS Ubiquitin signature 53 74 IPR019956 -
Pvu5g0620 154 CDD Ubl_NEDD8 79 152 IPR038738 -
Pvu5g0620 154 CDD Ubl_ubiquitin 1 76 - -
Pvu5g0620 154 SMART ubq_7 77 148 IPR000626 GO:0005515
Pvu5g0620 154 SMART ubq_7 1 72 IPR000626 GO:0005515
Pvu5g0620 154 Gene3D - 1 77 - -
Pvu5g0620 154 Gene3D - 78 154 - -
Pvu5g0620 154 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0620 Pvu-Chr5 8290842 8296093 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0620 1 76 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 100.000 2.33e-50 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0620 K12158 - gmx:100794152 290.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0620 5 8290842 8296093 Pvu5g0620 5 8290842 8296093 ECH