Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0619 ATGGGGAAAGGAAGAGCACCATGCTGTGATAAAACTCAAGTGAAGAGAGGTCCTTGGAACCCTGCAGAAGACCTTAAACTCATAGCCTTCATCCAGAAATATGGCCATGAAAACTGGCGTGCCCTCCCAAAACAAGCTGGACTTCTGAGATGTGGAAAAAGTTGTCGATTGAGATGGATCAATTATCTAAGACCTGATGTGAAGAGAGGCAATTTTACACCAGAGGAAGAGGAAACCATAATAAGGCTACACAAGACCATGGGAAACAAGTGGTCAAAGATTGCATCACGTTTGCCTGGTAGGACAGACAATGAGATCAAGAATGTGTGGAACACCCACTTAAAGAAAAGGTTGGTTCCTAAAAAAAGTTCAGGATCAAGTACAGATGAATCCAAGCCAGAATCAACAATAACTTCCACCTCTTCCTCTTCATCTCAGTCATTTTTCTCAAATGAGAGGCCAAGTTCACCTAAGACCACAACACCTTATAATGAATGTTATGACCAAGCTGATCAATTATCAATGGGAGAAAAAATTGAGCAGGATTCAGAAAAACAAGTGTCCAGTGAACTAATTGCCATGACTGAGGATCCAAAAGAGTCATCAGCTTCATTATCTTGTGAGACAAATATTATAAATTCGAGCCTGAATGCTGCACAAAAACCAGAACAACAATTGGCTTCTCCTTTATCAGTTTCAATGTATTCTGTTGAGACTGATGTTGTAAATTCAGGCCACATAGTAGCACACAAAGCAGAACAACAATTGGCTTCTCCATTATCCTACCTAGGACCTTGTGACGTTGGCCGTATTTTAGAAGAGGTGGATAAACCAAACCACCTGATTGAAATTCCATGGGAACCAGATTATGAGTTTTGGAAGTTGTTAGATGATGATAGCCTTGGATCTTTTCAATCAAACCAAGTCCAATTAGGTGAGTTCCCAGCCAACCAAAACATGATTCTTGAAGAGGGTGTTGAAGATGCTGAGGCCAGGAAGTGGTCCCATGATTTTGAGAATGAGTTTGGAGTAGTAGGTGAGGTAAAGGAGTCAAACAAGGATGATTTCCTACCAAAGAACTATGCAGTTGAGCCACAAATGGACCACCACACTCATGCATTTGATTTCGATGATATGACACGAGCAGAATCCGAATTGGACTTTGATAATATCCAATTATGGCCCTTTTGGCCTCAAAATACTAGTCTCTAG 1212 0.4092 MGKGRAPCCDKTQVKRGPWNPAEDLKLIAFIQKYGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTPEEEETIIRLHKTMGNKWSKIASRLPGRTDNEIKNVWNTHLKKRLVPKKSSGSSTDESKPESTITSTSSSSSQSFFSNERPSSPKTTTPYNECYDQADQLSMGEKIEQDSEKQVSSELIAMTEDPKESSASLSCETNIINSSLNAAQKPEQQLASPLSVSMYSVETDVVNSGHIVAHKAEQQLASPLSYLGPCDVGRILEEVDKPNHLIEIPWEPDYEFWKLLDDDSLGSFQSNQVQLGEFPANQNMILEEGVEDAEARKWSHDFENEFGVVGEVKESNKDDFLPKNYAVEPQMDHHTHAFDFDDMTRAESELDFDNIQLWPFWPQNTSL* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0619 403 SMART sant 68 116 IPR001005 -
Pvu5g0619 403 SMART sant 15 65 IPR001005 -
Pvu5g0619 403 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 354 - -
Pvu5g0619 403 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Pvu5g0619 403 MobiDBLite consensus disorder prediction 124 165 - -
Pvu5g0619 403 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Pvu5g0619 403 PANTHER - 1 354 - -
Pvu5g0619 403 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Pvu5g0619 403 CDD SANT 71 114 IPR001005 -
Pvu5g0619 403 Gene3D - 71 143 - -
Pvu5g0619 403 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Pvu5g0619 403 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Pvu5g0619 403 CDD SANT 18 63 IPR001005 -
Pvu5g0619 403 Gene3D - 16 68 - -
Pvu5g0619 403 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Pvu5g0619 403 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Pvu5g0619 403 MobiDBLite consensus disorder prediction 117 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0619 Pvu-Chr5 8228046 8230977 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0619 1 120 MYB Transcription Factor Family AT1G56160 82.500 2.37e-72 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu5g0619 Myb_DNA-binding 1.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0619 K09422 - gmx:100101836 589.341