Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0609 ATGGGTGTGAACGAAAATTTCAACAAGGATGATGATCATCATGAGTGTGTGGATGATGATGAAATTCCACTTCCCGGATTTCGATTCCACCCCACAGATGAAGAGCTTGTTAGTTTCTATCTTCGAAGGAAGCTTGACAAGAAACCCATCAGCATCGACCTCATCAAACAGATTGATATTTACAAATACGATCCTTGGGATCTTCCAAAAAGCAATGGCAGTGGAGGAGAGAAGGAGGGGTACTTCTTCTGCAGAAGAGGGAGGAAGTATAGGAATAGCATAAGGCCTAACAGAGTCACTGGCTCTGGGTTCTGGAAAGCAACTGGCATAGACAAGCCAGTGTACTCATATGGAGGAGAAGGCAATGACTGCATTGGACTCAAAAAAACCCTAGTGTACTACCGTGGCAGTGCAGGCAAAGGCACCAAAACCGATTGGATGATGCACGAGTTTCGACTTCCTTCTAACACAGACACCAACACAAGCCTTCCCAACTCCAGGAACTATGTAGATGTTCCCCAAGAAGCTGAAATTTGGACGCTGTGTAGAATTTTCAAAAGAAATGTGTCACTGAGGAAGCACGTGCCGGACTTGAAACAAGTATCTGCTAAGCGCCATGCATTTTACGATAAGAGCTCCAGAACGAAAAATGTGGAGTTTGACAGTGCTAATCAAGAATCGTATATAAACTTTGGTGGACACTATCAGAATGAGCAGAAACCCTTCATCAACTATACAAACAGTGATAAAAGGAATCAGTTTAATGTGATGAGTCAGTTGTGTTCTACGGTGGCACAGCAACAACCTCAACTAAGTGCACCATCTTCTAACCTTTGGAGTAACCCACCTGGGAATGATTTCTTCAACTTTGATAACTGGGATGAACTTGGATCTGTGGTGAAGTTAGCTGTTGATTCGCCTAGCTTGTAG 930 0.4355 MGVNENFNKDDDHHECVDDDEIPLPGFRFHPTDEELVSFYLRRKLDKKPISIDLIKQIDIYKYDPWDLPKSNGSGGEKEGYFFCRRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSYGGEGNDCIGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSNTDTNTSLPNSRNYVDVPQEAEIWTLCRIFKRNVSLRKHVPDLKQVSAKRHAFYDKSSRTKNVEFDSANQESYINFGGHYQNEQKPFINYTNSDKRNQFNVMSQLCSTVAQQQPQLSAPSSNLWSNPPGNDFFNFDNWDELGSVVKLAVDSPSL* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0609 309 SUPERFAMILY NAC domain 24 187 IPR036093 GO:0003677|GO:0006355
Pvu5g0609 309 Gene3D NAC domain 32 191 IPR036093 GO:0003677|GO:0006355
Pvu5g0609 309 Pfam No apical meristem (NAM) protein 25 153 IPR003441 GO:0003677|GO:0006355
Pvu5g0609 309 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 307 - -
Pvu5g0609 309 ProSiteProfiles NAC domain profile. 23 187 IPR003441 GO:0003677|GO:0006355
Pvu5g0609 309 PANTHER TRANSCRIPTION FACTOR JUNGBRUNNEN 1-LIKE 15 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0609 Pvu-Chr5 7934451 7936671 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0609 10 196 NAC Transcription Factor Family AT5G39820 57.214 3.13e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu5g0609 NAM 1.4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0609 - - gmx:100790471 522.702