Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0572 ATGAGCAACATAAGCATGGTGGAGGCAAAGTTGCCACCAGGGTTCAGGTTCCATCCAAGAGATGAAGAGCTTGTCTGTGATTACTTGATGAAGAAGCTCACACACAATGATTCCCTTCTCATGATAGATGTTGACCTTAACAAGTGTGAACCTTGGGATATTCCTGAAACAGCATGTGTGGGAGGGAAAGACTGGTATTTCTATACACAAAGAGACCGTAAGTATGCAACAGGGTTACGCACAAATCGTGCCACTGCCTCAGGGTACTGGAAGGCCACAGGGAAGGACAGACCTATCCTTCGCAAGGGCACCCTTGTTGGTATGAGGAAGACTTTGGTGTTCTATCAAGGAAGGGCACCCAAAGGGAGAAAAACTGAATGGGTCATGCATGAGTTTCGCATAGAAGGTCCCCATGGACCCCCTAAAGTTTCTTCTTCTAAGGAAGACTGGGTTTTGTGTAGAGTGTTCTACAAAAGCAGAGAAGTTTCAGCCAAACCTAGCATGGGTAGCTGCTATGAAGACACAGGCTCTTCATCTCTTCCTGCATTAATGGACTCTTACATTAGTTTTGATCAAACTCAAGCTCATGCAGATGAGTTTGAGCAAGTGCCCTGCTTCTCCATTTTCTCTCAGAACCAAGCAAACCCCATTTTCAACCACATGACTACCATGGAGCCTAAACTACCTGCAACTACATATGGAGGAGCACCAAATTTGGGTTACTGTTTAGACCCTTTATCCTGTGACAGAAAAGTGTTGAAAGCTGTTTTGAGTCAGATCACAAAAATGGAAAGGAATCCTCTGAACCAAAGTCTTAAAGGGTCTACAAGCTTTGGAGAAGGAAGCTCAGAGAGTTACTTATCTGAAGTGGGGATGCCTCACATGTGGAACAATTACTGA 900 0.4467 MSNISMVEAKLPPGFRFHPRDEELVCDYLMKKLTHNDSLLMIDVDLNKCEPWDIPETACVGGKDWYFYTQRDRKYATGLRTNRATASGYWKATGKDRPILRKGTLVGMRKTLVFYQGRAPKGRKTEWVMHEFRIEGPHGPPKVSSSKEDWVLCRVFYKSREVSAKPSMGSCYEDTGSSSLPALMDSYISFDQTQAHADEFEQVPCFSIFSQNQANPIFNHMTTMEPKLPATTYGGAPNLGYCLDPLSCDRKVLKAVLSQITKMERNPLNQSLKGSTSFGEGSSESYLSEVGMPHMWNNY* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0572 299 Pfam No apical meristem (NAM) protein 12 134 IPR003441 GO:0003677|GO:0006355
Pvu5g0572 299 SUPERFAMILY NAC domain 2 158 IPR036093 GO:0003677|GO:0006355
Pvu5g0572 299 ProSiteProfiles NAC domain profile. 11 158 IPR003441 GO:0003677|GO:0006355
Pvu5g0572 299 PANTHER NAC (NO APICAL MERISTEM) DOMAIN TRANSCRIPTIONAL REGULATOR SUPERFAMILY PROTEIN 3 295 - -
Pvu5g0572 299 Gene3D NAC domain 20 163 IPR036093 GO:0003677|GO:0006355
Pvu5g0572 299 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0572 Pvu-Chr5 7254487 7258898 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0572 2 297 NAC Transcription Factor Family AT1G56010 60.568 2.09e-126 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu5g0572 NAM 7.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0572 - - gmx:100301890 584.334