Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0561 ATGATGGCATTGGACTGTAGTTTTCACTTCCTTAGTGGGGTTTACATGATGCTGTTGTTTTGCCTTGGCATTGTGCTTGTGAATTCGGTTAATGAAGAGGGGTCTAGTCTTTTGATGTTCAAAGCTTCCCTTCATGACCCAAACAACAATCTCTATAACTGGAATTCTTCTGATTTGACTCCTTGCAATTGGACTGGTGTATATTGCACGGGTTCAGTGGTAACTGGTGTGAAACTTTACCAACTCAATCTATCTGGTACTTTGGCTCCTACCATCTGCAATCTTCCAAAGCTGCTCGAGTTGAATTTGTCAAAAAATTTCATCTCTGGCCCCATTCCTGATGGTTTCGCTGACTGTGGTAGTTTGGAGGTTTTGGACCTTTGCACAAATAGGCTTCACGGACACCTTCTGACCCCTATTTCGAAAATCACAACACTTAAAAAGCTCTATCTGTGTGAAAACTATATGTATGATGAAGTGCCAGAGGAGCTTGGGAATTTGGTGTCACTTGAGGAGCTTGGGAATTTGGTGTCACTTGAGGAGCTAGTCATTTATAGCAATAATTTAACTGGGAGAATTCCCTCTTCAATAAGAAAGTTGAAGCGGCTTAGAGTTATAAGGGCAGGTCTGAATGGCCTCTCAGGACCAATACCAACTGAAATCAGTGAATGTGAGAGCTTGGAGATATTGGGGTTGGCACAGAATCAGCTAGAAGGTTCCATTCCAAGGGAGCTTCAAAAGCTACAGAACCTCACCACTATACTTCTGTGGCAAAATTCTTTCTCTGGAGAGATTCCTCCTGAGATTGGAAATATTAGTAGCTTGGAATTGCTTGCTTTGCACCAAAATTCACTAACTGGTGGTGTCCCCAGGGAACTGGGAAAGCTGTCCCAGTTGAAGAGGTTGTACATGTACACCAACATGTTGAATGGAACAATTCCACCTGAGCTAGGAAACTGCACAAAAGCTATTGAGATAGACCTATCTGAAAATCATTTGATTGGGATCATTCCCAAAGAGTTGGGCCTAATCTCTAATCTTAGCTTGCTTCATCTGTTTGAAAACAACCTGCAAGGTCATATTCCAAGGGAGCTTGGTCAGCTGAGGGTGCTAAGAAATTTAGACCTGTCACTAAATAGCTTGACTGGTACAATTCCACTGGAGTTTGAAAACCTTACATACATGGAAGATCTGCAGCTATTTGACAATCAACTTGAGGGTGTGATTCCTCCTCGGCTTGGAGCTATTAGAAACCTTACTATTCTTGATATATCTGCAAACAACCTTTTTGGTATGATACCTCTTCATCTTTGTGGATATCAGAAGCTGCAATTCCTGAGTCTTGGGTCAAATAGGTTGTTTGGAAATATTCCTTATAGCCTGAAAACGTGCAAATCTCTTGTGCAGCTTATGCTGGGGGACAACCTGCTGACAGGAAGCCTACCTGTTGAGTTGTATGAACTTCACAATCTTACTGCTCTTGAACTCTATCAGAACCGATTTTCGGGGATGATAAACCCCGGGATAGGCCAACTAAGGAATCTAGAGAGGCTTCTCTTGTCAGCTAACTACTTTGAAGGCTATCTCCCTCCTGAGATTGGAAGTTTGACACAACTTGTCACATTCAATGTTTCCTCTAACCGTTTCAGTGGAAGCATTCCTCATGAGTTGGGAAACTGTGTTAGACTGCAGAGACTTGATCTTAGCAGGAACCACTTCACTGGTATGCTTCCAAATGAAATTGGCAGTCTGGTGAACTTGGAGCTGTTAAAAGTTTCTGATAACATGCTCTCAGGAGAAATACCAGGCACTTTGGGGAATCTTATTCGGCTCACAGACCTGGAACTAGGTGGCAACCAGTTTTCTGGAAGCATCTCTATCCATTTGGGAAGACTTGCAGCTCTTCAGATTGCTCTTAACCTGAGCCACAACAAACTTTCTGGCTCAATTCCTGATAGTCTTGGGAACTTACAAATGCTAGAGTCTCTTTATCTCAATGACAATCAACTTGTTGGTGAGATTCCTAGATCAATTGGTGACCTTCTCAGTCTTGTAGTATGCAATGTATCTAACAACAAGCTAGTAGGATTTGTTCCAGACACCACTACATTTAGAAAGATGGATTTCATGAACTTTGCTGGGAATAACGGTTTGTGCCGTGTCGGTACCAGTCATTGCCATCCATCTGTATCTTCCTCTCATGCTGCCAAACAAAACTGGATCAGAAATGGTTCCTCAAGGGAAAAAATAGTGAGCATTGTTTCTGGGGTTGTTGGACTAGTTTCTCTTATTTTCATAGTGTGGATATGTTTGGCTATGAGGCATCGTAGCCATGATGCTTTTGCCTCACTTGAAGGGCAACCTAACACCCATGTCTTGGATAACTACTACTTTCCTAAAGAAGGGTTTACATACCAGGATCTCTTGGAAGCCACTGGCAATTTTTCAGAAAATGCAGTTCTAGGAAGAGGAGCTTGTGGCACTGTGTACAAGGCTGTTATGAGTGATGGTGAAGTGATTGCTGTCAAGAAGCTGAATTCACGAGGAGAAGGAGCAAATAGTGTTGATCGAAGCTTCCTTGCCGAGATTTCAACTCTTGGAAAGATCAGGCACAGGAACATTGTGAAGCTGTATGGATTTTGCTACCATGAGGATTCTAATCTTCTCCTATATGAATACATGGAAAATGGAAGCCTTGGGGAACAACTTCATTCAAGTGCAATCACTTGTGCACTGGATTGGAGTAGTCGATACAAAATTGCTCTTGGAGCAGCAGAAGGCTTATGCTATCTACATTATGATTGCAAACCTCAAATCATTCACCGTGACATAAAGTCAAACAACATATTACTTGATGAGGTGTTTCAGGCTCACGTTGGAGACTTCGGTTTGGCAAAGTTGATTGATTTTTCTTTCTCAAAATCCATGTCTGCTGTGGCTGGTTCCTATGGCTACATTGCCCCAGAATACGCTTACACGATGAAGGTGACTGAGAAGTGTGACATCTATAGCTTTGGGGTAGTTTTGCTTGAACTAGTCACTGGGAGGTCACCTGTTCAACCTTTGGAACAAGGTGGTGACCTAGTCACTTGTGTGAGAAGAGCAATTCAAGCATCAGTACCAACATCTGAATTATTTGACAAGAGATTGAATCTTAGTGCTCCAAAGACAGTTGAAGAAATGTCTCTTATCCTCAAAATTGCCCTGTTCTGCACCAGCACGTCTCCACTAAACAGGCCTACTATGAGAGAGGTCATTGCAATGTTGATTGATGCCAGGGAATATGTCAGCAACTCTCCAACCTCTCCTACATCAGAATCTCCATTGCATGAGGATGATGCCATTTCTTCCAAAGATGATGGTGTTGAATTGTAA 3375 0.424 MMALDCSFHFLSGVYMMLLFCLGIVLVNSVNEEGSSLLMFKASLHDPNNNLYNWNSSDLTPCNWTGVYCTGSVVTGVKLYQLNLSGTLAPTICNLPKLLELNLSKNFISGPIPDGFADCGSLEVLDLCTNRLHGHLLTPISKITTLKKLYLCENYMYDEVPEELGNLVSLEELGNLVSLEELVIYSNNLTGRIPSSIRKLKRLRVIRAGLNGLSGPIPTEISECESLEILGLAQNQLEGSIPRELQKLQNLTTILLWQNSFSGEIPPEIGNISSLELLALHQNSLTGGVPRELGKLSQLKRLYMYTNMLNGTIPPELGNCTKAIEIDLSENHLIGIIPKELGLISNLSLLHLFENNLQGHIPRELGQLRVLRNLDLSLNSLTGTIPLEFENLTYMEDLQLFDNQLEGVIPPRLGAIRNLTILDISANNLFGMIPLHLCGYQKLQFLSLGSNRLFGNIPYSLKTCKSLVQLMLGDNLLTGSLPVELYELHNLTALELYQNRFSGMINPGIGQLRNLERLLLSANYFEGYLPPEIGSLTQLVTFNVSSNRFSGSIPHELGNCVRLQRLDLSRNHFTGMLPNEIGSLVNLELLKVSDNMLSGEIPGTLGNLIRLTDLELGGNQFSGSISIHLGRLAALQIALNLSHNKLSGSIPDSLGNLQMLESLYLNDNQLVGEIPRSIGDLLSLVVCNVSNNKLVGFVPDTTTFRKMDFMNFAGNNGLCRVGTSHCHPSVSSSHAAKQNWIRNGSSREKIVSIVSGVVGLVSLIFIVWICLAMRHRSHDAFASLEGQPNTHVLDNYYFPKEGFTYQDLLEATGNFSENAVLGRGACGTVYKAVMSDGEVIAVKKLNSRGEGANSVDRSFLAEISTLGKIRHRNIVKLYGFCYHEDSNLLLYEYMENGSLGEQLHSSAITCALDWSSRYKIALGAAEGLCYLHYDCKPQIIHRDIKSNNILLDEVFQAHVGDFGLAKLIDFSFSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELVTGRSPVQPLEQGGDLVTCVRRAIQASVPTSELFDKRLNLSAPKTVEEMSLILKIALFCTSTSPLNRPTMREVIAMLIDAREYVSNSPTSPTSESPLHEDDAISSKDDGVEL* 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0561 1124 SUPERFAMILY RNI-like 373 716 - -
Pvu5g0561 1124 SUPERFAMILY L domain-like 173 477 - -
Pvu5g0561 1124 Gene3D Transferase(Phosphotransferase) domain 1 894 1108 - -
Pvu5g0561 1124 PANTHER OS07G0152200 PROTEIN 16 1100 - -
Pvu5g0561 1124 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 16 1100 - -
Pvu5g0561 1124 Gene3D Ribonuclease Inhibitor 505 600 IPR032675 -
Pvu5g0561 1124 Gene3D Ribonuclease Inhibitor 29 172 IPR032675 -
Pvu5g0561 1124 Gene3D Ribonuclease Inhibitor 408 504 IPR032675 -
Pvu5g0561 1124 Gene3D Ribonuclease Inhibitor 601 727 IPR032675 -
Pvu5g0561 1124 SMART LRR_typ_2 176 200 IPR003591 -
Pvu5g0561 1124 SMART LRR_typ_2 536 560 IPR003591 -
Pvu5g0561 1124 SMART LRR_typ_2 344 368 IPR003591 -
Pvu5g0561 1124 SMART LRR_typ_2 95 118 IPR003591 -
Pvu5g0561 1124 SMART LRR_typ_2 296 320 IPR003591 -
Pvu5g0561 1124 SMART LRR_typ_2 584 608 IPR003591 -
Pvu5g0561 1124 SMART LRR_typ_2 561 583 IPR003591 -
Pvu5g0561 1124 SMART LRR_typ_2 657 681 IPR003591 -
Pvu5g0561 1124 SMART LRR_typ_2 488 512 IPR003591 -
Pvu5g0561 1124 MobiDBLite consensus disorder prediction 1097 1124 - -
Pvu5g0561 1124 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Pvu5g0561 1124 Gene3D Ribonuclease Inhibitor 173 407 IPR032675 -
Pvu5g0561 1124 Pfam Leucine Rich Repeat 562 584 IPR001611 GO:0005515
Pvu5g0561 1124 SMART serkin_6 815 1096 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g0561 1124 ProSitePatterns Serine/Threonine protein kinases active-site signature. 939 951 IPR008271 GO:0004672|GO:0006468
Pvu5g0561 1124 Pfam Protein kinase domain 816 1086 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g0561 1124 Gene3D Phosphorylase Kinase; domain 1 782 893 - -
Pvu5g0561 1124 ProSiteProfiles Protein kinase domain profile. 815 1096 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g0561 1124 SUPERFAMILY L domain-like 54 240 - -
Pvu5g0561 1124 SUPERFAMILY Protein kinase-like (PK-like) 790 1089 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0561 Pvu-Chr5 7045081 7049428 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0561 52 1093 Receptor kinase-like Gene Family AT1G73080 36.962 0.0 608
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pvu5g0561 Pkinase 3.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0561 - - pvu:PHAVU_005G054300g 2211.03