Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0518 ATGGATAAATCAGAAGTGACTCCACAGCGGCAGCAGCAACAACAGCAGCAGCATGTGATGGGAGTTGCTGCAGGTGCTAGCCAAATGGCCTATTCTCACTACCAGACTGCTCCCATGGTGGCTGCCGGCACACCTGCTGTAGCTGTGCCTTCTCAAACACAGGCTCCTGGTGCCTTCTCTAGTTCTGCTCACCAACTTGCTTACCAGCAAGCACAGCATTTTCACCATCAACAGCAGCAGCACCAACAACAGCAGCTGCAAATGTTCTGGTCAGATCAAATGCAAGAAATCGAGCAAACAATTGACTTTAAAAACCACAGTCTCCCTCTTGCTCGAATAAAAAAGATAATGAAAGCTGATGAAGATGTCCGAATGATTTCAGCAGAAGCTCCAGTCATATTTGCAAAAGCATGTGAAATGTTCATACTAGAGTTGACATTACGTTCTTGGATTCACACAGAAGAGAACAAGAGGAGAACCTTACAGAAGAATGATATAGCAGCTGCTATTTCAAGAAATGATGTTTTTGATTTCTTGGTTGATATTATTCCAAGAGATGAATTGAAAGAGGAAGGACTTGGAATAACCAAGGCTACTATTCCATTAGTGGGTTCACCTGCTGATATTCCCTATTACTATGTCCCTCCACAGCATCCTGTGGGACCTCCTGGGATGATCATGGGGAAGCCAGTTGATCAAGCAGCACTATATTCTACACAGCAGCCTCGACCTCCCATGGCTTTCATGCCATGGCCCCATACACAACCCCAGCCACAGCATTCACCCCAACAACAAACAGATTCATGA 807 0.4548 MDKSEVTPQRQQQQQQQHVMGVAAGASQMAYSHYQTAPMVAAGTPAVAVPSQTQAPGAFSSSAHQLAYQQAQHFHHQQQQHQQQQLQMFWSDQMQEIEQTIDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRNDVFDFLVDIIPRDELKEEGLGITKATIPLVGSPADIPYYYVPPQHPVGPPGMIMGKPVDQAALYSTQQPRPPMAFMPWPHTQPQPQHSPQQQTDS* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0518 268 Pfam Core histone H2A/H2B/H3/H4 70 170 IPR007125 GO:0003677
Pvu5g0518 268 MobiDBLite consensus disorder prediction 1 20 - -
Pvu5g0518 268 SUPERFAMILY Histone-fold 64 179 IPR009072 GO:0046982
Pvu5g0518 268 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 11 263 - -
Pvu5g0518 268 MobiDBLite consensus disorder prediction 242 268 - -
Pvu5g0518 268 Gene3D Histone, subunit A 68 185 IPR009072 GO:0046982
Pvu5g0518 268 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 11 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0518 Pvu-Chr5 5922000 5924714 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0518 86 214 CCAAT-HAP5 Transcription Factor Family AT1G56170 88.462 9.09e-81 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Pvu5g0518 CBFD_NFYB_HMF 2.3e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0518 K08066 - gmx:100796987 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0518 5 5922000 5924714 Pvu5g0518 5 5922000 5924714 ECH