Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0490 ATGGCTCCAATGAGTCTCCCACCTGGGTTTAGGTTCCACCCCACTGATGAAGAGCTTGTTGCTTACTACTTGGAGAGGAAGATAACAGGTCGTTCAATAGAGCTTGACATCATTGCTGAAGTTGATTTATACAAGTGCGAACCTTGGGATTTGCCAGATAAATCATTCCTTCCAAGCAAGGACATGGAGTGGTACTTTTACAGTCCTAGAGACAGGAAGTACCCAAATGGGTCAAGAACTAACCGTGCAACACAAGCTGGATACTGGAAAGCTACAGGGAAAGATAGACCAGTGCACTCTCAAAAGAAGCCAGTTGGCATGAAGAAGACATTGGTATACTATAAAGGTAGAGCACCACATGGCCTTAGAACGAACTGGGTTATGCATGAATATCGCTTGATTGAATCAGTGCCTGGTGCTGCTCTTTCATCTTTGAAGGATTCCTATTCGTTGTGTCGCATTTTCAAGAAGACGATTCAAATTCCAGCGAAACCCAGTAAAGAAGAAGAACAAGCCGAGGATGCAAAGAAGGAATCAATGTGGATCTCAGAAGAACAAATGTTAGGAGAAGACTCAAGTGGCACTGAGTTTTCCAGAGAAATGGAAACCGTGGAGGAGAAAATTCTGAATCATGAATACCCTAAATTTCCCTGTGACGCTTCTTCCTCTGATCTCACTCAAGGAACATGCACACCCACAGACACTGGTATAGCAGAAGATTTTCAACCACACTTTGCTTGTGATGAAGCAAACAGTGCAACTAATTCATATACAATGGGAATAGGGTATGCCAGCAATCTATTTCAGGATGTGGAAATACCTTCTTATGGTGGCGTGCATTATCAACTCCCTTACACACCTTTGGTGCTGGAAGACTTCCCTCAACTTACATTGCCGGAGACAAAGTCAACAAAGCCAGAAGTGAGTGATCCCTGCATGTTATATGACAGATACAGAGACTGTATGAATGGAACGCTAGAAGAGATAATCTCTTTGTGTTGCACTCAAGATAATTCCCTCCCTTTTCCCATGCTAGAATGA 1041 0.4313 MAPMSLPPGFRFHPTDEELVAYYLERKITGRSIELDIIAEVDLYKCEPWDLPDKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATQAGYWKATGKDRPVHSQKKPVGMKKTLVYYKGRAPHGLRTNWVMHEYRLIESVPGAALSSLKDSYSLCRIFKKTIQIPAKPSKEEEQAEDAKKESMWISEEQMLGEDSSGTEFSREMETVEEKILNHEYPKFPCDASSSDLTQGTCTPTDTGIAEDFQPHFACDEANSATNSYTMGIGYASNLFQDVEIPSYGGVHYQLPYTPLVLEDFPQLTLPETKSTKPEVSDPCMLYDRYRDCMNGTLEEIISLCCTQDNSLPFPMLE* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0490 346 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 1 163 - -
Pvu5g0490 346 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 163 - -
Pvu5g0490 346 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
Pvu5g0490 346 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Pvu5g0490 346 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Pvu5g0490 346 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0490 Pvu-Chr5 5316261 5320980 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0490 1 340 NAC Transcription Factor Family AT1G54330 52.199 5.98e-102 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu5g0490 NAM 1.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0490 - - gmx:100808325 669.848