Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0482 ATGGCAACCCATAACATCGCACCCAGACTACTCTATGTTCTGCAACAGACTCCTCGGTCCATGGCTCGATTTTTTGGAGTGACAACAGCCTTGAGGAAAGAAGGATTAGAATCATCAAATCTCATCCTTGGAATTGATTTTACAAAGAGTAATGAATGGACTGGCAGAATCTCATTCAATAAAAGAAGCCTGCATGCTATTGGAACTACACCTAATCCTTATGAGAAGGCTATCTCTATAATTGGCAAGACTTTGGCTCCCTTTGATGATGACAACTTGATTCCATGCTTTGGCTTTGGTGATGCTACTACCCATGATGAAGAAGTGTTTAGCTTTCACAGTGATCATTCACCTTGCCATGGCTTTGAGGAAGTCTTGGCTTGCTACCAGAAAATAGTTCCAAACTTGAAACTTTCAGGACCAACTTCTTATGCTCCGGTGATTGAAGCTGCCATAGACATAGTTGAGAAAAGCCGTGGCCAATTCCATGTGTTGGTTATAGTTGCTGATGGCCAGGTTACAAGAAGTGTCAACACTGGAGATGGAGAGCTAAGTCCTCAGGAAGAAAAGACAATTAAAGCAATCGTTGATGCAAGTGCATATCCTCTTGCAATAATTCTAGTAGGAGTTGGTGACGGGCCTTGGGAAGATATGAGAAAGTTTGATGACAGGTTACCTGCACGCGATTATGACAATTTTCAGTTTGTTAATTTCACTGAAATAATGTCGAAAAACATAAGCCCCTCTGAGAAAGAAGCAGCTTTTGCTCTGGCTGCTCTCATGGAGATCCCCTTCCAGTATAAAGCCACCATGGAATTTGGAATACTCGGACGTGTGAGAGGAAGAGCAAAGAGAATAGTTCCAAAAGCTCCTCCTATACCCTATTCTAGGCCTGCACCCTCACCAGCTCGTCTTCCCAGCACTGCACCAGCATCCTCCATTGATGACCAAAACCAATCGGTTTGCCCTGTGTGTTTGACCAATCCAAGAGACTTGGCCTTTGGGTGTGGACACATGACATGCAGGGAGTGTGGATACAAGTTAACTAATTGTCCGATGTGCCGAGAGAGGATCAATACTCGTCTTAGGGTGTACAGTGGGTGA 1104 0.4411 MATHNIAPRLLYVLQQTPRSMARFFGVTTALRKEGLESSNLILGIDFTKSNEWTGRISFNKRSLHAIGTTPNPYEKAISIIGKTLAPFDDDNLIPCFGFGDATTHDEEVFSFHSDHSPCHGFEEVLACYQKIVPNLKLSGPTSYAPVIEAAIDIVEKSRGQFHVLVIVADGQVTRSVNTGDGELSPQEEKTIKAIVDASAYPLAIILVGVGDGPWEDMRKFDDRLPARDYDNFQFVNFTEIMSKNISPSEKEAAFALAALMEIPFQYKATMEFGILGRVRGRAKRIVPKAPPIPYSRPAPSPARLPSTAPASSIDDQNQSVCPVCLTNPRDLAFGCGHMTCRECGYKLTNCPMCRERINTRLRVYSG* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0482 367 ProSiteProfiles Zinc finger RING-type profile. 322 355 IPR001841 -
Pvu5g0482 367 PANTHER COPINE FAMILY PROTEIN 1 26 366 - -
Pvu5g0482 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 366 IPR013083 -
Pvu5g0482 367 SUPERFAMILY RING/U-box 314 361 - -
Pvu5g0482 367 MobiDBLite consensus disorder prediction 291 305 - -
Pvu5g0482 367 Pfam Zinc finger, C3HC4 type (RING finger) 319 359 - -
Pvu5g0482 367 PANTHER UBIQUITIN-PROTEIN LIGASE RGLG2-LIKE PROTEIN, PUTATIVE-RELATED 26 366 - -
Pvu5g0482 367 SMART VWA_4 38 240 IPR002035 -
Pvu5g0482 367 MobiDBLite consensus disorder prediction 290 316 - -
Pvu5g0482 367 CDD RING-HC_RGLG_plant 321 365 IPR045317 GO:0061630|GO:0070534
Pvu5g0482 367 Pfam Copine 63 275 IPR010734 -
Pvu5g0482 367 SUPERFAMILY vWA-like 39 222 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0482 Pvu-Chr5 5085415 5096362 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0482 K16280 - gmx:100790153 609.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0482 5 5085415 5096362 Pvu5g0482 5 5085415 5096362 ECH
Pvu5g0482 5 5085415 5096362 Pvu11g1867 11 45507032 45518040 PCT