Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0479 ATGAAGAGACAGAGAGAAATGGATGGGTTAGCAACCATAGATTTGGCAAATTGTCTAATGCTTCTGTCTTGCCCCCAACAAAAGAAGTTACAACCAAAATATGTTGAGGGTGTGGAATTTGAATGCAAGACATGCAACAGAAAGTTCTCGTCCTTTCAAGCATTGGGTGGCCATAGGGCTAGCCACAAAAGGTCGAAACTTGAGGGGTATGAACACAAAGCAGATGCTATGTCTCTAAGTTTGGGAATTAATAAACCCAAAATGCACGAGTGTACCATTTGTGGACAAGAATTCTCATTGGGACAGGCACTTGGAGGCCACATGAGAAGACATAGAGCTTCCATCAAAGACCATTTTTCTCCAATTAACCATGTTGCACAAGTACCAGTTTTGAAAAGATCCAATAGCTCCAGGGGTATGTGCATGGACTTGAACCTAACACCGTTAGAGAATGACTTCAAGTTATTGTTTGGAAAGATGGCACCAAATGTTGGTGCCCTAGTCTGA 507 0.4221 MKRQREMDGLATIDLANCLMLLSCPQQKKLQPKYVEGVEFECKTCNRKFSSFQALGGHRASHKRSKLEGYEHKADAMSLSLGINKPKMHECTICGQEFSLGQALGGHMRRHRASIKDHFSPINHVAQVPVLKRSNSSRGMCMDLNLTPLENDFKLLFGKMAPNVGALV* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0479 168 Pfam C2H2-type zinc finger 40 64 - -
Pvu5g0479 168 Pfam C2H2-type zinc finger 89 113 - -
Pvu5g0479 168 Gene3D Classic Zinc Finger 38 111 - -
Pvu5g0479 168 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Pvu5g0479 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Pvu5g0479 168 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 12 164 - -
Pvu5g0479 168 SMART c2h2final6 40 62 IPR013087 -
Pvu5g0479 168 SMART c2h2final6 89 111 IPR013087 -
Pvu5g0479 168 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Pvu5g0479 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
Pvu5g0479 168 PANTHER ZINC FINGER PROTEIN ZAT5 12 164 - -
Pvu5g0479 168 SUPERFAMILY beta-beta-alpha zinc fingers 40 111 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0479 Pvu-Chr5 5001671 5002177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0479 1 159 C2H2 Transcription Factor Family AT2G37430 50.877 2.34e-42 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu5g0479 zf-C2H2_6 7.6e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0479 - - gmx:100806997 248.054