Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0471 ATGCCAACATTGATTTCATCTAGGTTTCTTTTGCTTGTTGGGGAGTCACTCCACTTGAGAAGGGCTTTGGCCACTTCTAGGTCTGTTTTATTGCACACTAGTGTGAAGTGCATGAGCCAGGTGGAACCTAATCATGGTTCCCTCACCCTCTCTAGCATAGGTTTCCAAACTGAAACTGAAGCTGGGAATAGAAGCACATCTAATAAGGTTAAGCAATTTGGTTCACCCTCTGAGAATCTCAAGAGCAAAGAAAAACCCTTTGGCATTAATGAGAAGAAGAAGAAAGCAGTTAGGGTTGTAGAAAAACAGCAAATAGAGTTTGCCCCTTTTGCTGCAAAGTCATTTCCAGAACTTGGCCTCCCACATGTGTTGATTGAGAGACTACAGAAGGAGGGTTTTACTGTTCCGACTGAAGTTCAGTCTGCTGCAGTTCCCACCATTCTAAACAACCGCGATGTCATAATTCAGTCTTACACGGGTTCAGGGAAGACACTAGCTTATCTGCTTCCTATTCTCTCGGTTGTTGGACCGCTGAGGGGGAAAGGTGGTGATGATGGTGAAGAGAATGGGAAGAAGTTGGGAATAGAAGCAGTGATTGTTGCTCCTTCTAGAGAGCTTGGAATGCAGATAGTGAGGGAGTTTGAGAAGGTGCTAGGAATGGATAACAAGAGAGTGGTTCAGCAGCTTGTGGGGGGTGCCAACCGAACCAGGCAGGAAGAAGCTCTCAAGAAAAATAAACCTGCAATTGTTGTTGGCACACCTGGTAGGATAGCAGAGCTAAGTGCATCCGGGAAACTTCGTACTCATGGATGTCGATATTTGGTATTAGATGAAGTTGATGAACTCTTGTCGTTCAATTTTCGGGAAGACATGCACCGGATATTGGAGCATGTAGGGAGGAAATCAAATGCAGACCCAAACTCAAATGCTGGAAAGAGTGAGCGTCAGTTAATCATGGTTTCTGCAACTGTGCCCTTTTCTGTTGTAAGGGCAGCAAGAAGCTGGGGTTGTGACCCTCTTCTTGTCCAAGCTAAGAAAATTGTCCCGCTTGAAACTGTCTCTCCCTCTGAGCCTGTCAGTTTATCCCGGTCTTCTTTGCCCAATTCGGCTGTGCCATCTCAAGCAGCGGTAGAGAGTCTGCCTCCTGCGCTGAAACACTATTACTGTGTAACAAGGTTGCAGCACAAAGTTGATGTGTTGAGAAGGTGTATTCATGCACTGGATGCCAAATTTGTGATAGCTTTCATGAACCACACTAAACAGCTAAAGGATGTTGTCTTCAAGCTGGAGGCCCGTGGGATGAAAGCTGTGGAGTTACATGGGGATCTAGGGAAGCTTGCAAGGTCAACAACCCTGAAGAAATTCAAGAACGGTGAGGTGAGAGTTCTGGTGACAAATGAATTGTCAGCAAGGGGCTTGGATGTGGCAGAATGTGATCTTGTGGTTAATCTCGACTTACCAACAGATTCAATTCATTATGCGCACCGGGCTGGCCGAACTGGTCGGCTTGGTAGGAATGGTACAGTGCTAACCATATGTGAAGAGCCAGAAGTGTTTGTTGTGAAGAAATTGAAGAAGCAGCTGGGAATACCAATTGTATCCTGTGATTTTTCAGAGGGGAAACTACTTGTCACTGAAGAAGAGGAAACAGTTAGCACTTCTACTATCAGTTGA 1674 0.4552 MPTLISSRFLLLVGESLHLRRALATSRSVLLHTSVKCMSQVEPNHGSLTLSSIGFQTETEAGNRSTSNKVKQFGSPSENLKSKEKPFGINEKKKKAVRVVEKQQIEFAPFAAKSFPELGLPHVLIERLQKEGFTVPTEVQSAAVPTILNNRDVIIQSYTGSGKTLAYLLPILSVVGPLRGKGGDDGEENGKKLGIEAVIVAPSRELGMQIVREFEKVLGMDNKRVVQQLVGGANRTRQEEALKKNKPAIVVGTPGRIAELSASGKLRTHGCRYLVLDEVDELLSFNFREDMHRILEHVGRKSNADPNSNAGKSERQLIMVSATVPFSVVRAARSWGCDPLLVQAKKIVPLETVSPSEPVSLSRSSLPNSAVPSQAAVESLPPALKHYYCVTRLQHKVDVLRRCIHALDAKFVIAFMNHTKQLKDVVFKLEARGMKAVELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRNGTVLTICEEPEVFVVKKLKKQLGIPIVSCDFSEGKLLVTEEEETVSTSTIS* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0471 557 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 144 342 IPR014001 -
Pvu5g0471 557 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 113 141 IPR014014 GO:0003724
Pvu5g0471 557 MobiDBLite consensus disorder prediction 59 79 - -
Pvu5g0471 557 CDD SF2_C_DEAD 384 513 - -
Pvu5g0471 557 MobiDBLite consensus disorder prediction 59 83 - -
Pvu5g0471 557 Gene3D - 77 344 IPR027417 -
Pvu5g0471 557 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 1 532 - -
Pvu5g0471 557 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 1 532 - -
Pvu5g0471 557 CDD DEADc 124 343 - -
Pvu5g0471 557 Pfam DEAD/DEAH box helicase 137 328 IPR011545 GO:0003676|GO:0005524
Pvu5g0471 557 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 525 IPR027417 -
Pvu5g0471 557 SMART helicmild6 423 504 IPR001650 -
Pvu5g0471 557 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 399 543 IPR001650 -
Pvu5g0471 557 SMART ultradead3 132 362 IPR014001 -
Pvu5g0471 557 Pfam Helicase conserved C-terminal domain 401 504 IPR001650 -
Pvu5g0471 557 Gene3D - 381 542 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0471 Pvu-Chr5 4775130 4777363 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0471 114 532 Eukaryotic Initiation Factors Gene Family AT3G19760 24.105 4.31e-42 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0471 - - gmx:100812968 932.554