Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0446 ATGGAAGGCAAAGGTTTAGGAGAAGTCAGAAGGCTTCACATCATTTACTTCCTTAGTCAGATAGGTGGTCGTGCAGATCATCCTCATCTAATTCGTGTTCTTCATCTTACTCGTAATGGGGTTTATCTAAGAGATGTGAAGAGATGGCTTGGGGAATTGAGAGGGAAAGAATTGCCTGAGGTTTTTTCTTGGTCCTACAAGAGGAGGTACAAGAGTGGATATGTGTGGCAAGACTTGTTGGATGACGACCTCATAACCCCCATCTCTGACAATGAATACATCCTCAAAGGATCACAAATCCACACTATCCCATTTGCAACAACTCCTTCACTTGAAGAAAAGAAAACTACAGTTTGTGATATCAATGCTGAAAAGATGTGTCCTCAATCACAACTTGTAGAGGACAGAGAACACCAGCAGCAGCCGCCACAGTCCTTAACAGAAGAAGAATCTCAGATTCAAGCAGACCATAATTCTAAAACAAATTCTCCAACAAAAGGGTCATCAGAAATCAGTCAGGATTCGTTGGTCTTCAGCTCAGACAGGTCGTCTGTGACAGATGATGACTCTTCTAAGGTTGAAGAAGAGAAGCACTTAGAGATCAAAACAGGCAAAGAGAGTTTCAATGAAATGCACCAGGAGAAATTAGAGACTTGCACATTGCCTTCCTTGTATCACAATTTATTGAGTAAGAAGGGCACCCACAAAGATGACCAAAATAAAACTCACTCACCTGATTCATCCTTGTCCACCATTTCATCCTCATCGTCATCTCAGTCATCCTTTACTAAGATCAGAAGCAATTCTACAAAAGTTTCTAACATATTTCGAAATTGGATCACTTGCTCAAAAAAAAATTCGAAGGAACCTAACAACATACCTGAAACAAAACCTGAGATTTGTAAGGGAGACCGATTGGGAGGATCAGAGAGGTGTTTTAGGACTTCTTGGGGTCATCACGACCAGAAACAGCAATATGGGGCAAGAAAAAGCTTTGATGGAGAGGAAACAAACGGGAGCAGGAAAAAGTTAGGCGACTTGCTAAATCAAACTTCTTCCAAACCATTTGGTGGACCAATTTGCTCGCAATGTGGGAAGTCGTTTAGGCCTGAGAAAATGTACAAACACATGAAGTCTTGTAAAGGAATGAAAGCGTTGGGAAAGTCAGCTCCAAATGTTGAGGAGGCACAGCTTCCGAGATCATCAACTTCATCCCATACACACTACTTTTTGACCAACTAA 1242 0.4147 MEGKGLGEVRRLHIIYFLSQIGGRADHPHLIRVLHLTRNGVYLRDVKRWLGELRGKELPEVFSWSYKRRYKSGYVWQDLLDDDLITPISDNEYILKGSQIHTIPFATTPSLEEKKTTVCDINAEKMCPQSQLVEDREHQQQPPQSLTEEESQIQADHNSKTNSPTKGSSEISQDSLVFSSDRSSVTDDDSSKVEEEKHLEIKTGKESFNEMHQEKLETCTLPSLYHNLLSKKGTHKDDQNKTHSPDSSLSTISSSSSSQSSFTKIRSNSTKVSNIFRNWITCSKKNSKEPNNIPETKPEICKGDRLGGSERCFRTSWGHHDQKQQYGARKSFDGEETNGSRKKLGDLLNQTSSKPFGGPICSQCGKSFRPEKMYKHMKSCKGMKALGKSAPNVEEAQLPRSSTSSHTHYFLTN* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0446 413 MobiDBLite consensus disorder prediction 131 209 - -
Pvu5g0446 413 MobiDBLite consensus disorder prediction 395 413 - -
Pvu5g0446 413 MobiDBLite consensus disorder prediction 133 184 - -
Pvu5g0446 413 MobiDBLite consensus disorder prediction 389 413 - -
Pvu5g0446 413 MobiDBLite consensus disorder prediction 318 343 - -
Pvu5g0446 413 MobiDBLite consensus disorder prediction 244 264 - -
Pvu5g0446 413 MobiDBLite consensus disorder prediction 318 342 - -
Pvu5g0446 413 PANTHER F3F20.2 PROTEIN 3 397 - -
Pvu5g0446 413 MobiDBLite consensus disorder prediction 232 264 - -
Pvu5g0446 413 Pfam Protein SOSEKI, plant 13 278 IPR010369 -
Pvu5g0446 413 MobiDBLite consensus disorder prediction 185 209 - -
Pvu5g0446 413 PANTHER UPSTREAM OF FLC PROTEIN (DUF966) 3 397 IPR010369 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0446 Pvu-Chr5 4345399 4347981 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu5g0446 DUF966 1.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0446 - - vun:114179809 733.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0446 5 4345399 4347981 Pvu5g0446 5 4345399 4347981 ECH