Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0440 ATGGCGACGGCGGCGGAGCCCGAAGCGAAGACCTACTGGTGCCACGAATGCGACATGAGCGTGTCCCTCACGCTCCCTCCCTCGCCTCTCCTCTGCCCGCACTGCCACACCCACTTCCTCGAACTCATGGACTCTCCCTTCTCCCAAAACGACGCCGAATCACCGCTCTTCGACGTTCTCTTCCAGGACGCGCTCTTGCTGCTCTCCCCCAAGCCCCTTCCTACCAAACCCCGCCCTCTCCCCTCCGTCCACGTCACCCCGTCGCTCCTCTCCGCGCTCGACCCCAACGGCGTCGTTTTCTGCGCCGTCTGCAAAGACCAAATTGCCCTCGACGCCGAGGCCAAACAGTTACCCTGCAAACACCTCTACCACGCCGACTGCATCACGCCCTGGCTCGAGCTCCACGCCTCCTGCCCGCTGTGCAGGCTCCGCCTGGAGGAAGAAGCGGCGGCGGAGGAGGAGGAAGAGGAGGGTGACGGCGTGGTGACGGAGATCCGGCGGGAGCTGATCGCGAGGCTGTCGGAGTTGACGGAGGAGGATTTCTACGGGCTGAGGACCACGCTCAGCCACATTGCCTCGCGCCACGCGCTCATCGAAGAGAACGAGAACCGCCCGCAAATTGGCGAACCTCGAGGTATATAG 642 0.6402 MATAAEPEAKTYWCHECDMSVSLTLPPSPLLCPHCHTHFLELMDSPFSQNDAESPLFDVLFQDALLLLSPKPLPTKPRPLPSVHVTPSLLSALDPNGVVFCAVCKDQIALDAEAKQLPCKHLYHADCITPWLELHASCPLCRLRLEEEAAAEEEEEEGDGVVTEIRRELIARLSELTEEDFYGLRTTLSHIASRHALIEENENRPQIGEPRGI* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0440 213 SUPERFAMILY RING/U-box 94 146 - -
Pvu5g0440 213 SMART ring_2 101 141 IPR001841 -
Pvu5g0440 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 160 IPR013083 -
Pvu5g0440 213 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 69 168 - -
Pvu5g0440 213 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 47 - -
Pvu5g0440 213 Pfam zinc-ribbon 11 43 IPR039525 GO:0061630
Pvu5g0440 213 ProSiteProfiles Zinc finger RING-type profile. 101 142 IPR001841 -
Pvu5g0440 213 Pfam Ring finger domain 101 142 IPR001841 -
Pvu5g0440 213 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 69 168 - -
Pvu5g0440 213 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 1 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0440 Pvu-Chr5 4209317 4212072 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0440 5 63 C3H Transcription Factor Family AT3G60080 47.692 1.43e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0440 K11982 - gmx:100775530 308.145