Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0415 TATCATTTGGATGGGATAGAAGAGCGTTTCAGAAGCCTAGAAGCTGTAGCTTTTAGGGCTAGGCAACATGAGAGGCAACCACTGACTCATGCTCCCATTCAAATAGTTAACCCTGCAGGAGAAGTGGTAACAATTGCTCATCTTCAAGATGAAGAGGTTGGTGTTGATGATGTTGAAGGAGAGATGATAGAAGATGGGAGAAAGGAAAAAAGAAGGGCTAGTTATTTGGTTGCTAAAGCATTGGGGGTGAAAACCAATGAAGGAGAGGGTTTTGCTGCAAAGTTGTTTCATTGTAATGTCTGCTTGAACAGGGCAAAGGATCCTGTTTTGACTTGTTGTGGTCACTTGTTTTGTTGGCCTTGCTTTCTTAAACTGCCATATGCTTATTTAAAGGTAAAGGAATGTCCTGTTTGTAAAGGAGAGGTCACGAATGAAAGTGTTATCACAATTTATGGCAATTCAAATGTCCACAACAGTGAGAAGTTGAAATTTGATGAACCCAATTATGAAATTCCTTCCAAACCTCGTTCAAAGAGGGTTGAGAGCACTAGGCCGCGATTCAGAAATTGA 570 0.4088 YHLDGIEERFRSLEAVAFRARQHERQPLTHAPIQIVNPAGEVVTIAHLQDEEVGVDDVEGEMIEDGRKEKRRASYLVAKALGVKTNEGEGFAAKLFHCNVCLNRAKDPVLTCCGHLFCWPCFLKLPYAYLKVKECPVCKGEVTNESVITIYGNSNVHNSEKLKFDEPNYEIPSKPRSKRVESTRPRFRN* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0415 189 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 6 185 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pvu5g0415 189 SUPERFAMILY RING/U-box 94 147 - -
Pvu5g0415 189 ProSiteProfiles Zinc finger RING-type profile. 98 139 IPR001841 -
Pvu5g0415 189 Pfam Zinc finger, C3HC4 type (RING finger) 97 143 - -
Pvu5g0415 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 185 IPR013083 -
Pvu5g0415 189 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 6 185 - -
Pvu5g0415 189 SMART ring_2 98 138 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0415 Pvu-Chr5 3978279 3978848 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0415 90 184 C3H Transcription Factor Family AT3G58030 46.465 1.49e-25 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0415 K10666 - gmx:100780540 239.58