Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0414 ATGGAACTTGGTTTGAGCTTGGGAGACTCTTCAAGGCCTTTGCTTGCCTTCATGGAAAAGCCTCGTGAAGCCTCCAACCAACCGGGGTTAGGCTTCACCACCGCTTTGTCAATCGGGCCACTCATCGCTAGACAAAAGGATCAACAAGATGAATTTGAAGAAGAAGAAGAAGAAGAAGAAACAAAGCCAAGGAACAACAACAACAGCATCAACACTCACACAACAGAAGATCCTTCCAAACCCAACAACAACCCAGTTCTGCATCAGCTTGATCTTCTCCCTCAACTCTATCTCCCATGGCACCCTCCTTCTGAAAACGGGAGTTTGTCATCTGAGTTGGGAGGTTCTTCTAGGGGCTTGGACGTGAACGCGCAGCCGCCGCTGGCGGAGGATGAGGGGGAGGAAGTGGCGGCGCTGTCATCATCTCCGAACAGCGCAGCCTCGTCGTTTCAAATGGATCTCTGCATATACAACAGAGGAGGGAGTTTCTATAAAAGGAACTATGAGGGTGAAGCTTATGATCAAAGGGCCTCTCCAAGAGCCAGTGATGAAGATGATAACAACGGCAGTGGCGGCAACGCCAGAAAGAAACTCAGACTCTCCAAGGAACAATCTGCGTTCCTTGAAGAGAGTTTCAAAGAACACAACACTCTTAATCCTAAACAAAAGCTTGCTCTTGCTAAACAACTCAATCTACGACCTCGACAAGTAGAAGTGTGGTTTCAAAACCGAAGGGCAAGGACCAAGTTGAAGCAAACAGAAGTGGATTGTGAGTACTTGAAGAGGTGTTGTGAGACCCTAACGGAAGAGAATAGAAGACTTCACAAGGAGCTTCAAGAATTGAGGGCTTTGAAGACTTCAAACCCCTTCTACATGCAATTACCAGCCACAACTTTGACCATGTGCCCTTCTTGTGAACGTGTGGCCACAAATTCCACATCCACTTCCTCCTCTCTCAGTGCTCCTAATGCCACCATCAATGCAAATTCAGGAGCCATGACCATTGTCAAAACCAGTGGCAGTAACAATGACTCACCCTCCAAAGCCATGGGATTCCCATTTGGCAAACCCAGGTTTCATCCATTTGTTCACACCAGCCAACAACCCCATCAACACCAATCCCCATCATCTTGA 1134 0.4771 MELGLSLGDSSRPLLAFMEKPREASNQPGLGFTTALSIGPLIARQKDQQDEFEEEEEEEETKPRNNNNSINTHTTEDPSKPNNNPVLHQLDLLPQLYLPWHPPSENGSLSSELGGSSRGLDVNAQPPLAEDEGEEVAALSSSPNSAASSFQMDLCIYNRGGSFYKRNYEGEAYDQRASPRASDEDDNNGSGGNARKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKTSNPFYMQLPATTLTMCPSCERVATNSTSTSSSLSAPNATINANSGAMTIVKTSGSNNDSPSKAMGFPFGKPRFHPFVHTSQQPHQHQSPSS* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0414 377 SMART halz 251 294 IPR003106 GO:0006355|GO:0043565
Pvu5g0414 377 Coils Coil 264 287 - -
Pvu5g0414 377 MobiDBLite consensus disorder prediction 104 118 - -
Pvu5g0414 377 Gene3D - 199 249 - -
Pvu5g0414 377 PANTHER - 1 369 - -
Pvu5g0414 377 MobiDBLite consensus disorder prediction 65 87 - -
Pvu5g0414 377 SMART HOX_1 193 255 IPR001356 GO:0003677
Pvu5g0414 377 MobiDBLite consensus disorder prediction 172 199 - -
Pvu5g0414 377 MobiDBLite consensus disorder prediction 339 377 - -
Pvu5g0414 377 SUPERFAMILY Homeodomain-like 182 252 IPR009057 -
Pvu5g0414 377 ProSiteProfiles 'Homeobox' domain profile. 191 251 IPR001356 GO:0003677
Pvu5g0414 377 ProSitePatterns 'Homeobox' domain signature. 226 249 IPR017970 GO:0000981|GO:0006355
Pvu5g0414 377 PANTHER PROTEIN, PUTATIVE-RELATED 1 369 - -
Pvu5g0414 377 CDD homeodomain 195 252 IPR001356 GO:0003677
Pvu5g0414 377 Coils Coil 42 62 - -
Pvu5g0414 377 MobiDBLite consensus disorder prediction 20 87 - -
Pvu5g0414 377 MobiDBLite consensus disorder prediction 103 145 - -
Pvu5g0414 377 Pfam Homeobox associated leucine zipper 251 285 IPR003106 GO:0006355|GO:0043565
Pvu5g0414 377 Pfam Homeodomain 195 249 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0414 Pvu-Chr5 3938569 3940856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0414 111 310 Homeobox Transcription Factor Family AT2G44910 61.905 8.26e-68 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pvu5g0414 Homeodomain 2.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0414 K09338 - gmx:100805312 532.332