Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0409 ATGGAAAACCACCAAAACCACAAGGCAGAGCCAGAACCTGACAGAGACAAGAACCACCACCATAGCCAGGCCTGGGGCACGTGGGAGGAGTTGTTGCTAGCGTTTGCCGTCAACCGCCATGGCTCCAAGGACTGGGACACCGTCGCCATGGAGGTTCAGTCGCGCGCCACGCGCCTCCTCGCCACGGCGCGCCACTGCGAGCAGAAATTTCACGATCTCAGCCGCCGATTCGCCGACCAATGCAACGACGGCGTTACGCCGCCGCAACAGAACGGCGCCGCCGACGGCGACAACTCCGATCACGTCCCGTGGTTAGACGAATTGCGGAAACTCCGAGTCGCCGAGCTCCGCCGCGACGTCCAGCGGAGCGACGTTTCCATTCTGTCGCTGCAGTTGGAGGTGAAGAGGCTGGAGGAGGAGAAAACGAAAGAGAATGACTGTAAAGACGACAAGAAACCAGATCTGGCGGTTTCCGGCGAAGCGCGGGCGGAAAACGACAAAACCGGCGGAGAAGTTGAGGAGGCTGGACCGGCGAATTCCGAACCGGAGAGAACCGCGAACGCTGGGAAGATGTTGCCAACAACGGGCGACGAATCGGACCGGGAGAATCAGTCAGTTAACGAGTCTAACTCAACCGGTTCGAGGTTTGATAAAACCGGGGAAGGTGAAGCAAAGTTAAAAGTCGAACCGGATCCGGTTCAGACCGGTTCGAAAGAACCGGACCCGGTTGCGAGGAAGGGAAAGCCGGTTGGGGAGGAGTCTAATAACGGAAGCTACGATGCGTTAGCGAAGGTGCCAACGTGTGAGTCGGTGCCTCCGAGTGACGAGAGGAAGGTGGAGCAGGACGATGACTCGTCTGAGTTGCACGACTCGGTGGCTCACTCTGGAGAGGGAGGGACGAGGGAGAGCAGCGAGGTGCAGAGCTCAGCCAGCTTGACGAGGAAGAGGAAGACGCGGCGGAGAAAAGAGGTTTCCGGCAGCGACGGTCGTGGAGGTGGGACCTCCACACCGCCGGAGAACGACGAGGTGGCGATGGTTAAATCAGAACCGTTGGTTGGGGTTTTGGAGTTGATCAAGGGGCACGAGCACAGCTCATTCTTCGAGCGCCGTCTTGAAAGCCAGCTGGAGTCGGACAGATACAAAGATATAGTGAAACAGCCTCTGGACCTGGAAACCATACAATTAAGAATCCAGAAAGGTCAGTATTCCTCGTGCACCAGTGCATTCTTCCGCGATCTCCTCCTCCTTTTCACCAATGCCACCGTGATCTTCCCCTATGACTCTCCGGAGTCACAGGCGGCACGGCAGCTGCACCGCCTTGTCACCACCGAGATGAAGAACTACGGCCAAGCACAGTCCGACCCTATTCCCCGGAAGAACGATTCACTCCCTCCAAACGTACCATTAGCCAAACCAGATTCTCTCTTTTCCAAGAACAAAGCCTCTGGTCCTATATTGGTTTGCCGCAAACGCAGTTCAATGTCAGCGAAACCTTCCTCGACCACTTTTGGTCAAAAGGGGGTTGACCAACCCGTCTTCAATGACAAGAAGGAAAGGCCATCCTCTGATTCAAAACCTCCCATGAAACCTTCTTCTTCTGATACAGACGAGGAGGAGCCTCCCAAGGCCAAGGAAAAGCCTGTCACTGGAGCGAGAAGCCTTAGAAGGAGCAACAAGAACCTCAACAATAAGAAACTTTCCTCTAACTCCACTCCTAAGGCAGGATCCTCCGGTAACAAGCCATCTGAAACCCCTAAACCAGAGAAGAGCAAAGCAGAAGGAGGGCCTGACAAGAAGAGGAATGCTGCTGCAGATTTCTTGAAGCGGATAAAGCGTAATACTTCAGTGGAAGCAGTGAAGGGTGGTAGCGGTGGTGGTGGTGGTGGAGGAGGAAGTAGTAGCAGCAGCAAGGGAGGTGGAGGTGGTGTTGGTGTGAAAGAGCAGAAGAAAATAGTGAATAATGGAAAGGGGGATAAAGGGAAAGAAAGGGCATCAAGGCATAGTGGTGGAGGGGGATCAGCGTCTGGGGATAAAAGGAATAAGAACATTGAGAACAACTCTCAGTCGAAGAGGAGTGTAGGTAGACCTCCAAAGAAGGTAGTGGAGACAAATGCAGGAAGTTCAAAGCGTGGGAGGGAAAATAGTGCTAGTGCTGGCAAGGATAAGCGACCCAAGAAACGTTCCAAGAAATGA 2193 0.5435 MENHQNHKAEPEPDRDKNHHHSQAWGTWEELLLAFAVNRHGSKDWDTVAMEVQSRATRLLATARHCEQKFHDLSRRFADQCNDGVTPPQQNGAADGDNSDHVPWLDELRKLRVAELRRDVQRSDVSILSLQLEVKRLEEEKTKENDCKDDKKPDLAVSGEARAENDKTGGEVEEAGPANSEPERTANAGKMLPTTGDESDRENQSVNESNSTGSRFDKTGEGEAKLKVEPDPVQTGSKEPDPVARKGKPVGEESNNGSYDALAKVPTCESVPPSDERKVEQDDDSSELHDSVAHSGEGGTRESSEVQSSASLTRKRKTRRRKEVSGSDGRGGGTSTPPENDEVAMVKSEPLVGVLELIKGHEHSSFFERRLESQLESDRYKDIVKQPLDLETIQLRIQKGQYSSCTSAFFRDLLLLFTNATVIFPYDSPESQAARQLHRLVTTEMKNYGQAQSDPIPRKNDSLPPNVPLAKPDSLFSKNKASGPILVCRKRSSMSAKPSSTTFGQKGVDQPVFNDKKERPSSDSKPPMKPSSSDTDEEEPPKAKEKPVTGARSLRRSNKNLNNKKLSSNSTPKAGSSGNKPSETPKPEKSKAEGGPDKKRNAAADFLKRIKRNTSVEAVKGGSGGGGGGGGSSSSSKGGGGGVGVKEQKKIVNNGKGDKGKERASRHSGGGGSASGDKRNKNIENNSQSKRSVGRPPKKVVETNAGSSKRGRENSASAGKDKRPKKRSKK* 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0409 730 MobiDBLite consensus disorder prediction 139 344 - -
Pvu5g0409 730 PANTHER BNAC04G22430D PROTEIN 12 730 - -
Pvu5g0409 730 SUPERFAMILY Bromodomain 351 455 IPR036427 GO:0005515
Pvu5g0409 730 MobiDBLite consensus disorder prediction 584 615 - -
Pvu5g0409 730 MobiDBLite consensus disorder prediction 678 693 - -
Pvu5g0409 730 MobiDBLite consensus disorder prediction 1 23 - -
Pvu5g0409 730 MobiDBLite consensus disorder prediction 651 666 - -
Pvu5g0409 730 ProSiteProfiles Bromodomain profile. 359 431 IPR001487 GO:0005515
Pvu5g0409 730 MobiDBLite consensus disorder prediction 271 296 - -
Pvu5g0409 730 MobiDBLite consensus disorder prediction 493 508 - -
Pvu5g0409 730 MobiDBLite consensus disorder prediction 139 171 - -
Pvu5g0409 730 MobiDBLite consensus disorder prediction 82 101 - -
Pvu5g0409 730 MobiDBLite consensus disorder prediction 511 552 - -
Pvu5g0409 730 PANTHER BROMODOMAIN-CONTAINING PROTEIN 8 12 730 - -
Pvu5g0409 730 Pfam Myb-like DNA-binding domain 23 72 IPR001005 -
Pvu5g0409 730 MobiDBLite consensus disorder prediction 218 234 - -
Pvu5g0409 730 SMART bromo_6 340 450 IPR001487 GO:0005515
Pvu5g0409 730 MobiDBLite consensus disorder prediction 448 730 - -
Pvu5g0409 730 CDD SANT 24 73 IPR001005 -
Pvu5g0409 730 Coils Coil 120 140 - -
Pvu5g0409 730 MobiDBLite consensus disorder prediction 297 311 - -
Pvu5g0409 730 Pfam Bromodomain 355 435 IPR001487 GO:0005515
Pvu5g0409 730 MobiDBLite consensus disorder prediction 553 583 - -
Pvu5g0409 730 CDD Bromodomain 354 445 - -
Pvu5g0409 730 Gene3D - 350 461 IPR036427 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0409 Pvu-Chr5 3847072 3852091 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pvu5g0409 Bromodomain 9.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0409 - - gmx:100779988 1061.21