Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0405 ATGAGAACTAATACTCCTTCTCTGTTCTGTCTTCTATCTCTTGCTATTGCTACCATTTTGGGCAGTGGCACTGCAACTGCAACTCCAAGTGTGAAGCCAAGCCACTATGCTTCAACATTCAACAGAACCCTTTTTCCTTCCACTTTTATCTTTGGAGTAGGTTCTTCGCTTATCAGTACGAAACGATACGATTTCACTCTCCTACGATACGAGTTGTTTGAAGAATTTTTTTCGTCCATGAATCGTAGCTGTATCGCAGAAGGAGCAACAAATGTAGATGGCAGAGGAGCTAGTATTTGGGACACCTTCACCCAACAGCATCCTGAAAAAATTTGGGATCATAGCACTGGTGATGTTGGAGCTGATTTTTATCATTGCTACAAGAGTGACATAAAATTGGTGAAAGAAATTGGGATAGACTCCTTCAGATTCTCCATCTCTTGGACAAGAATATTCCCTAAAGGCAAAGGAGCTGTTAATCACTTGGGTGTTCAATTCTACAATAATCTCATCAATCAGATTATATCAAATGGCTTAATACCTTTTGTCACTCTTTTCCATTGGGACTTCCCACAAACTCTTGAAGATGAGTATGGGGGATTTCGTAGCTATAAAGTAGTGGAGGATTTTCATAGATATGCTGAGTTTTGCTTCAAGACCTTTGGAGACAGAGTGAAACATTGGGTGACTCTGAATGAACCTTTATCATATAGTCTCAATGGCTACAATGGTGGCACCTTTGCACCAGGTAGATGCTCTAAGTATGTTGCCAACTGCAGTGCTGGTGACTCAGCCACTGAACCCTACATCGTTGCACACAACCTATTACTTGCTCATGAGACTGCTGCCACATTGTACAAGACAAAATACCAGGCTCGTCAAAAGGGACAAATTGGTATCACCTTACCGACTCACTACTTTCTGCCCAAATCTAACACTGCTGCTGATCAGAGGGCTGCAAATAGAGCCCTAGACTTTTTCTTTGGCTGGTATGCTCATCCACTTATCTATGGTGACTATCCGGAGAGTATGAAATGTTCAGTGGGTGCAAGACTTGCCAAATTCACAAAACCTCAATCCCAAGGCCTAAGAAAATCGATTGATTTTCTTGGTGTCAATTACTACACCACATATTATGCACAAAATGCTGCACCTGTCACCACCAACACCAACTTCTACACAGATATGCTAGCCACTCTTACTACGGAAAAGAATGGTGTACCTATTGGAACCCCGACGGAATTGGATTGGCTTTTTATATATCCCAAGGGAATTTACTATCTTATGATATACATCAGGAATAAATACAACAATCCAAATATTTACATCACTGAAAATGGCGTTGCTGAAACAAGGAATGATTCAATGCCAGTGGATGAAGCCCGCAAGGATGGTATCAGGATTGGATACCTTATTGGCCATCTTCATTTCCTTCTTCAATCCATCAGGGAAGGTGTTAATGTGAAGGGCTACTATGCATGGTCCTTTTCAGACAGCTTTGAATGGGATGCTGGTTATACCGTTCGATTTGGACAGATATATGTGGATTACAAGAACAATTTCAAAAGATACCTAAAGTTCTCTTCTCTTTGGCTGAAAAAATTCCTTCTCAACTGA 1617 0.41 MRTNTPSLFCLLSLAIATILGSGTATATPSVKPSHYASTFNRTLFPSTFIFGVGSSLISTKRYDFTLLRYELFEEFFSSMNRSCIAEGATNVDGRGASIWDTFTQQHPEKIWDHSTGDVGADFYHCYKSDIKLVKEIGIDSFRFSISWTRIFPKGKGAVNHLGVQFYNNLINQIISNGLIPFVTLFHWDFPQTLEDEYGGFRSYKVVEDFHRYAEFCFKTFGDRVKHWVTLNEPLSYSLNGYNGGTFAPGRCSKYVANCSAGDSATEPYIVAHNLLLAHETAATLYKTKYQARQKGQIGITLPTHYFLPKSNTAADQRAANRALDFFFGWYAHPLIYGDYPESMKCSVGARLAKFTKPQSQGLRKSIDFLGVNYYTTYYAQNAAPVTTNTNFYTDMLATLTTEKNGVPIGTPTELDWLFIYPKGIYYLMIYIRNKYNNPNIYITENGVAETRNDSMPVDEARKDGIRIGYLIGHLHFLLQSIREGVNVKGYYAWSFSDSFEWDAGYTVRFGQIYVDYKNNFKRYLKFSSLWLKKFLLN* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0405 538 PANTHER BETA-GLUCOSIDASE 17 17 537 - -
Pvu5g0405 538 Pfam Glycosyl hydrolase family 1 83 535 IPR001360 GO:0004553|GO:0005975
Pvu5g0405 538 SUPERFAMILY (Trans)glycosidases 85 536 IPR017853 -
Pvu5g0405 538 Gene3D Glycosidases 25 538 - -
Pvu5g0405 538 PANTHER GLYCOSYL HYDROLASE 17 537 IPR001360 GO:0004553|GO:0005975
Pvu5g0405 538 ProSitePatterns Glycosyl hydrolases family 1 active site. 441 449 IPR018120 -
Pvu5g0405 538 PRINTS Glycosyl hydrolase family 1 signature 366 380 IPR001360 GO:0004553|GO:0005975
Pvu5g0405 538 PRINTS Glycosyl hydrolase family 1 signature 441 449 IPR001360 GO:0004553|GO:0005975
Pvu5g0405 538 PRINTS Glycosyl hydrolase family 1 signature 464 475 IPR001360 GO:0004553|GO:0005975
Pvu5g0405 538 PRINTS Glycosyl hydrolase family 1 signature 485 502 IPR001360 GO:0004553|GO:0005975
Pvu5g0405 538 PRINTS Glycosyl hydrolase family 1 signature 509 521 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0405 Pvu-Chr5 3774604 3782376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0405 1 536 Glycoside Hydrolase AT5G44640 45.000 5.23e-168 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0405 K22279 - gmx:100812639 808.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0405 5 3774604 3782376 Pvu11g1881 11 45693470 45700128 PCT