Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0404 ATGGCTTCTCTTCACTCTTCTCTTCTCTTGCCTCCAAATCTCCTTTCCCTAACTACCCCTTCAACTTCTCCTTCACACATTCTCTTCAACCTCAGACCCTCCACCACCCACTTGCGACCCCTTTCCACCACACACCGCCGTTTTGGGAGACCCTTCGCGGTGGCTGAGCAGGCCACGGTGACGGAGGCCGCGAGGAGGCTCTACGTCGGCAACATTCCTCGCACTGTCAACAACGATGAGCTCTCCAAAATTGTTCAAGAACATGGCGCTATTGAGAAAGCTGAGGTTATGTATGATAAATACTCTGGAAGGAGCCGTCGATTTGCATTTGTTACAATGAAAACTGTTGAGGATGCAAATGCTGTGATTGAGAAACTTAACGGCACTGAAATTGGAGGGCGTGAGATCAAAGTAAATGTTACCGAAAAACCTTTATCAACATCAGATTTGCCTTTATCCCAATCTGAGGAATCTCAATTTATTGACAGTCCCCACAAGGTGTATGTGGGAAATCTAGCCAAGACAGTAACAACTGATACTCTTAAAAAGTTTTTTTCTGAGAAGGGAAAAGTTCTGAGTGCCAAGGTTTCACGGGTCCCTGGTACCTCAAAATCCAGTGGGTATGGTTTTGTTACTTTTTCATCAGAAGATGATGTAGAAGCTGCAATCTCGTCTTTCAACAATTCTTCATTAGAAGGGCAAAAAGTCCGAGTGAACAAGGCATAG 726 0.4518 MASLHSSLLLPPNLLSLTTPSTSPSHILFNLRPSTTHLRPLSTTHRRFGRPFAVAEQATVTEAARRLYVGNIPRTVNNDELSKIVQEHGAIEKAEVMYDKYSGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNVTEKPLSTSDLPLSQSEESQFIDSPHKVYVGNLAKTVTTDTLKKFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEDDVEAAISSFNNSSLEGQKVRVNKA* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0404 241 PANTHER 30S RIBOSOMAL PROTEIN 2, CHLOROPLASTIC 1 241 - -
Pvu5g0404 241 PANTHER OS02G0815200 PROTEIN 1 241 - -
Pvu5g0404 241 SUPERFAMILY RNA-binding domain, RBD 57 143 IPR035979 GO:0003676
Pvu5g0404 241 SMART rrm1_1 66 139 IPR000504 GO:0003723
Pvu5g0404 241 SMART rrm1_1 166 239 IPR000504 GO:0003723
Pvu5g0404 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 67 137 IPR000504 GO:0003723
Pvu5g0404 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 167 236 IPR000504 GO:0003723
Pvu5g0404 241 Gene3D - 52 150 IPR012677 -
Pvu5g0404 241 Gene3D - 151 241 IPR012677 -
Pvu5g0404 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 241 IPR000504 GO:0003723
Pvu5g0404 241 CDD RRM_HP0827_like 66 143 - -
Pvu5g0404 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 65 143 IPR000504 GO:0003723
Pvu5g0404 241 SUPERFAMILY RNA-binding domain, RBD 155 241 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0404 Pvu-Chr5 3766136 3769277 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0404 67 241 Eukaryotic Initiation Factors Gene Family AT2G23350 32.000 1.44e-17 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0404 K13126 - gmx:100811197 362.073
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0404 5 3766136 3769277 Pvu5g0404 5 3766136 3769277 ECH