Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0403 ATGGCGCCGAAGAAGCCGAGAAGCACGTCGAGGAACCCTGAACTCATTAGGGGTATTGGGAAATACTCGAGGTCCCAGATGTACCACAAGAGGGGCATCTGGGCCATCAAGGCCAAAAACGGCGGCGTTTTCCCTCGCCACGACCCCAAGCCCAAGCCCGACTCCCTGGCCCAGAAGCCTCCCAAGTTTTACCCTGCCGACGATGTCAGGAAGCCCCTTCTCAACAAGCACAAGCCAAAGCCCGCCAAACTCAGGGCTAGCGTTACTCCAGGAACAGTGTTGATCCTGCTTGCTGGGAGGTTTAAGGGAAAGAGGGTTGTTTTCCTGAAACAGCTTCCATCTGGATTGCTTCTTGTAACAGGTCCCTTCAAGATCAACGGTGTTCCTCTTAGAAGGGTGAACCAATCATATGTCATTGGTACATCCACAAAAGTGGACATCTCTGGTGTTAATGTTGATAGATTTGATGACAAGTACTTTTCCAAGGATGCCAAGAAGAAGAGAACAAAGGGAGAAGGCGAGTTCTTTGAAGCAGAGAAGGAGGAGAAAAATGTGCTTCCCCAAGAGAAGAAAGATGACCAAAAAACCGTGGATACTGCCTTGTTAAAGGCAATTGAGAGTGTTCCAGACCTGAAGTCTTACTTGGGTGCTAGGTTTTCTTTGAAGGCAGGAATGAAGCCCCATGAACTAGTCTTCTAG 699 0.4921 MAPKKPRSTSRNPELIRGIGKYSRSQMYHKRGIWAIKAKNGGVFPRHDPKPKPDSLAQKPPKFYPADDVRKPLLNKHKPKPAKLRASVTPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDRFDDKYFSKDAKKKRTKGEGEFFEAEKEEKNVLPQEKKDDQKTVDTALLKAIESVPDLKSYLGARFSLKAGMKPHELVF* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0403 232 Pfam Ribosomal protein L6, N-terminal domain 4 58 IPR005568 GO:0003735|GO:0005840|GO:0006412
Pvu5g0403 232 MobiDBLite consensus disorder prediction 41 81 - -
Pvu5g0403 232 PANTHER 60S RIBOSOMAL PROTEIN L6 1 232 - -
Pvu5g0403 232 PANTHER 60S RIBOSOMAL PROTEIN L6 1 232 IPR000915 GO:0003735|GO:0005840|GO:0006412
Pvu5g0403 232 SUPERFAMILY Translation proteins SH3-like domain 86 172 IPR008991 -
Pvu5g0403 232 CDD KOW_RPL6 80 232 IPR041997 -
Pvu5g0403 232 Pfam Ribosomal protein L6e 125 232 IPR000915 GO:0003735|GO:0005840|GO:0006412
Pvu5g0403 232 Gene3D - 86 169 IPR014722 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0403 Pvu-Chr5 3763958 3765727 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0403 3 232 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 79.310 1.36e-119 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0403 K02934 - gmx:100784101 434.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0403 5 3763958 3765727 Pvu5g0403 5 3763958 3765727 ECH