Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0400 ATGGGGAAGTTATCAATCATGTTGCAGGGTAAGTGCAAGAACCGCAAGGAATCATCATCATCATGGCCATTAGCAAAATGTTTTCACCACATTCATAGAAGAGATATTGGCATGGGAAATGCACAAGAATGGAATATTGATTTTTCTGATCTCTTCATTGGGTACAAGTTTTCTCATGGTGCTCACAGTCAAATTTACCATGGTATATACAAGCAGCAACATGTGGCCATTAAAATCTTCAAGGTACGAGAATGTGAGGAAAAGGGAAACCTTAGATCTCTCTTAGAGACACAATTTTTGAGAGAAATCACACATCTACCTCGTCTGCACCATCAAAATGTGGTGAGTTTCATGGCAGCTTACAAAGACACTGATTCTTATTACATTCTCACGGAGTATCAACAAAAGGGGTCTTTAAGGGTATATTTGAACAAGCTTGAGTCCAAGCCAATTTCTCTCGAAAGGGTCATAGCTTTTGCTTTGGATATTGCTCGTGGAATGGAGTATGTGCATGCACAAGGTATCATTCATAGAGACCTTAAACCTGAGAATGTCCTTGTAGATAGGGACTCTCACCTCAAAATTGCTGATTTTGGCATTGCTTGTGAGGCTTCAAAGTGTGATTCATTGAGGGGAACATATCGCTGGATGGCACCAGAGATGATCAAAGAGAAAAGTTATGGGAGGAAGGTTGATGTGTACAGTTTTGGGCTTATTTTGTGGGAGCTGGTGAGTGGAACACTGCCATTTGAGGACATGAATCCAGTTCAGGTTGCTGTTGCAGTAGCAGATAGGAATTCAAGGCCTGTTCTTCCCACACATTGCCCACAAGGTTTGAGAGATTTGATCAATCAATGCTGGGCCTTGAAACCAGACAAGAGACTTGAATTCTGGCAGATTGTTCGAGTTTTGGAGCAATTGAGCAAACAAATTTTTCTCTGA 942 0.4119 MGKLSIMLQGKCKNRKESSSSWPLAKCFHHIHRRDIGMGNAQEWNIDFSDLFIGYKFSHGAHSQIYHGIYKQQHVAIKIFKVRECEEKGNLRSLLETQFLREITHLPRLHHQNVVSFMAAYKDTDSYYILTEYQQKGSLRVYLNKLESKPISLERVIAFALDIARGMEYVHAQGIIHRDLKPENVLVDRDSHLKIADFGIACEASKCDSLRGTYRWMAPEMIKEKSYGRKVDVYSFGLILWELVSGTLPFEDMNPVQVAVAVADRNSRPVLPTHCPQGLRDLINQCWALKPDKRLEFWQIVRVLEQLSKQIFL* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0400 313 SMART serkin_6 51 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g0400 313 Gene3D Transferase(Phosphotransferase) domain 1 136 312 - -
Pvu5g0400 313 ProSiteProfiles Protein kinase domain profile. 51 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g0400 313 CDD STKc_MAP3K-like 59 304 - -
Pvu5g0400 313 PIRSF ILK 30 312 - -
Pvu5g0400 313 Gene3D Phosphorylase Kinase; domain 1 40 135 - -
Pvu5g0400 313 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 6 308 - -
Pvu5g0400 313 SUPERFAMILY Protein kinase-like (PK-like) 27 304 IPR011009 -
Pvu5g0400 313 Pfam Protein tyrosine and serine/threonine kinase 56 304 IPR001245 GO:0004672|GO:0006468
Pvu5g0400 313 PRINTS Tyrosine kinase catalytic domain signature 131 144 IPR001245 GO:0004672|GO:0006468
Pvu5g0400 313 PRINTS Tyrosine kinase catalytic domain signature 169 187 IPR001245 GO:0004672|GO:0006468
Pvu5g0400 313 PRINTS Tyrosine kinase catalytic domain signature 212 222 IPR001245 GO:0004672|GO:0006468
Pvu5g0400 313 PRINTS Tyrosine kinase catalytic domain signature 231 253 IPR001245 GO:0004672|GO:0006468
Pvu5g0400 313 PRINTS Tyrosine kinase catalytic domain signature 275 297 IPR001245 GO:0004672|GO:0006468
Pvu5g0400 313 PANTHER TYROSINE KINASE FAMILY PROTEIN 6 308 - -
Pvu5g0400 313 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0400 Pvu-Chr5 3745119 3746060 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0400 5 308 MAP Kinase Kinase Kinase AT5G58950 52.443 7.11e-118 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Pvu5g0400 PK_Tyr_Ser-Thr 3.8e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0400 - - var:108332641 523.472