Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0342 ATGGACACAGATTCACCATACCCGTGGCTCAAAGATATGAATGGGGAGGATAGGGATAAATACCTGGCTCGTATTCTTAATGCCTGTGCCAAGTTTATTGAATCAGGAAGCATCATGAATGCAGATACTGGACTGGACTATATTGCTCACATTGCCTCCCCTTATGGTGATGCAATGCAAAGGGTAGCTACCTATATCAGTGAGGGTCTAGCTTTCCAAGTCCTGAAAAATTTGCAGGGAGTACCTAAAGCTGTTAATCTGTCAAAAACAATGTCAACCTCGGAAGAACAACTTGTTAAGAAGACATTCTATGACTTGTATCCATTTTTAAAGACTGCATATGTAATCACTAGCCATGCCATTGCTGAAGCTATTGAAGGAGAAGATGAGGTCCACGTCATTGATCTTGGTGCATCTGATGCTGCTCAGTGGATTTATCTTATGCATAGATTAAAAGAAAGCCAAAAGAGCCCCACAGTTCTGAAAATCACAGGCATACATGAGAAGGAGGAAATTCTAGAGGAAGTGGCCACTCAACTAAGAGTAGAAGCTAAAAGTTTGCATTTCAATCTCCAATTCAATGCTATTGTAAGCACTTTGGAGAATCTTGACCTTGAAGAATTGCCTGTGCAGAAAGGAGAGCCTCTTGTAATCAGCTCAGTGCTTCAGCTGCACACTCTTCTGGCCACTGATGATGCAATGGTCTGCATCAGGAGCTCGCAGGAAGAACCAATGCATCAAAGGACATTTGCTGAGATGCTTGGGAAGCAAAAGACCAACCCCAGTTCTGAATCATCGTTGTTACAGCTTCCTCTGTGTGCTACTTCAACAAAGATGATGCACTTTCTAAATGGCCTGTGGAAACTCCAACCTAGAGTGATGGTGGTTACTGAACAAGAATCCAATGTCAATGGTTCTTTGACAGAAAGGGTTGACAAAGCATTGGACTTTTACGGTGCATTGTTCAACTGTTTGGAGTCAACTGTTTCAACAACACTAGTAGAGAGAATCATCATGGAGAGGACTCTACTAGGACAAGAAATAAAGAACATTGTTGCAGGTGAAGGAGTTGAGAGAAAGGAGAGGCATGAGAAATTTGAGACTTGGATCCCAAAGCTAGAAATGGCCGGGTTTGAGAAGAAACATATTAGCCATCATGGGATGATGCAAGCAACAAAACAGTTGCATGGTTATGGAAATGGATACAAGCTTTGTCCGGAGAATAATTGTTTGTTTGTATGCTGGAATGATAAGCCACTATTTTCTGTGTCAGCCTGGACAGTTTAG 1287 0.4204 MDTDSPYPWLKDMNGEDRDKYLARILNACAKFIESGSIMNADTGLDYIAHIASPYGDAMQRVATYISEGLAFQVLKNLQGVPKAVNLSKTMSTSEEQLVKKTFYDLYPFLKTAYVITSHAIAEAIEGEDEVHVIDLGASDAAQWIYLMHRLKESQKSPTVLKITGIHEKEEILEEVATQLRVEAKSLHFNLQFNAIVSTLENLDLEELPVQKGEPLVISSVLQLHTLLATDDAMVCIRSSQEEPMHQRTFAEMLGKQKTNPSSESSLLQLPLCATSTKMMHFLNGLWKLQPRVMVVTEQESNVNGSLTERVDKALDFYGALFNCLESTVSTTLVERIIMERTLLGQEIKNIVAGEGVERKERHEKFETWIPKLEMAGFEKKHISHHGMMQATKQLHGYGNGYKLCPENNCLFVCWNDKPLFSVSAWTV* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0342 428 PANTHER TRANSCRIPTION FACTOR GRAS, SCARECROW-LIKE PROTEIN 3-RELATED 4 427 - -
Pvu5g0342 428 ProSiteProfiles GRAS family profile. 13 427 IPR005202 -
Pvu5g0342 428 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 4 427 IPR005202 -
Pvu5g0342 428 Pfam GRAS domain family 23 427 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0342 Pvu-Chr5 3028492 3030181 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0342 1 426 GRAS Transcription Factor Family AT1G50420 43.080 6.04e-123 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pvu5g0342 GRAS 1.8e-100 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0342 - - zju:107417805 425.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0342 5 3028492 3030181 Pvu5g0342 5 3028492 3030181 ECH