Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0326 ATGCAAGGAGAAAAAGATCCTCAAAAATGGCATGAAAATATCTTTGGCAACAAAAGATGCAAGCACTCTCAAAACATTGCTGAAGAATTGGGAGAGGCATCAAGATTTAAAGATGGTGGAGATGTTTCTTTAGAAAATTTAGATCAAGAAGCTGAATTCTTATCTGAAAGTTCATCACCAGAGGTATGTTTTTCCTCACAGGAACATCTCATTCGTGATAGTTATAGTCCTTCCTCTTTGCCAGCTATGGAGAATTTTAGAGAGTATATTTTAGAGCATGGCGAACCTCTTCACAAGAAACTCACAACGAGTGATGTGAATGTCAATCAAAATAGACTTCTTCTCAACAAAAATCATGTTGAAAAATCATTTTTACCATTGTTGAAAAATGATGAAAATATTGAGAGAGGAATTCAAGTTCCTGTCTATGATGCTCATCAAAATACTTTTAGTTTGACATTCAAGAAATGGACAAATAAATACTATGTGTTGAATGGTGGATGGAAAGATTTCTTCCAAGTCCATAAATTACAGAAGGATGATTCCATCACAGTGTGTATATTTCGTCATTCAAGCCATAACAAATTATGCTTCGCTCTTGATTATAAGAAGATTGGAGGTGACAAGATACAAAACCTATCATGA 645 0.3426 MQGEKDPQKWHENIFGNKRCKHSQNIAEELGEASRFKDGGDVSLENLDQEAEFLSESSSPEVCFSSQEHLIRDSYSPSSLPAMENFREYILEHGEPLHKKLTTSDVNVNQNRLLLNKNHVEKSFLPLLKNDENIERGIQVPVYDAHQNTFSLTFKKWTNKYYVLNGGWKDFFQVHKLQKDDSITVCIFRHSSHNKLCFALDYKKIGGDKIQNLS* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0326 214 Gene3D - 95 204 IPR015300 -
Pvu5g0326 214 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 59 204 IPR005508 GO:0003677
Pvu5g0326 214 PANTHER B3 DOMAIN PLANT PROTEIN 59 204 - -
Pvu5g0326 214 Pfam B3 DNA binding domain 99 194 IPR003340 GO:0003677
Pvu5g0326 214 SUPERFAMILY DNA-binding pseudobarrel domain 98 198 IPR015300 -
Pvu5g0326 214 ProSiteProfiles B3 DNA-binding domain profile. 98 204 IPR003340 GO:0003677
Pvu5g0326 214 CDD B3_DNA 99 198 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0326 Pvu-Chr5 2910189 2910833 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0326 96 206 B3 DNA Binding Superfamily AT4G03170 39.823 4.28e-20 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pvu5g0326 B3 5.6e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0326 - - pvu:PHAVU_005G031300g 440.654