Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0324 ATGGAAGTGGTGGAAAAGAGAAATTTTTCTAAGCTGTTGTCGGAGCTGATAGTTTTAGCCGATGAGGTTGCTTCTCTTGCTAAGAACTCTGAAATTGAGGTACATATTTTTGCTGAGTTTGCCATGCTGGTTGAGAAATTCTCACCAATCTTCAATGACTTGAGAGATGAAAACGCAGTCTTGGACAAGCCACCTATAAGAAAATCCTTGGAGTCTGTTGAGAGTGAGCTGAGGCGTGCCAAGGCTTTGACAAAAAACTCGAATTTGAGGCAGCCAATCAAGCAAATTGAGGACATAACTCATGACATAGGTCGATCCTTTGGCCTTCTGCTCGTGGCCAGCCTAGAAATTTCCATGGATTTCAGAGAAAAGATTGGCACATTGCAAAGGCTATTGATGAATGTGAGATTTGATGGCAGTTCAAGTGTGGCTTCAAGTCCAAAATCAGAGGCTTCAGGCAGTGACGTGAAGCTGAGTGGAGAAATAGTAGAGGAAGTAGTTAACGTTTCTATTGATGATGTTGTTTTGCAACTTAAGAATGGCAATGATGAAGAATTTGCAGTTTCACTTTTGAGACTGAAGGAGTTCATAAGGAGTGAAAGACTTGATGGTGGCTTGATTAACGAGGAAGCAACTCTTGCCATTCTTTTCAACCGTCTAGGTTCGTGTAAGGCAGACAATAGGTTGGCAATTATGCGATTGCTAAGAAGTATTGCTTTAGGAAATGATGAGAAAAAGGAGAAGATGGTAGATATTGAGTTCTTATCAGCAGTGGTGAAGTCACTGACAAGAGATTCACAGGAGAGGAAGGAAGCAGTAGGGCTGTTGCTAGAGCTCTCTGACATTCAGGCCGTTCGCCGGCGAATTGGAAGAATTCAAGGATGCATTGTTATGTTAGTTTCTATACTTAATGGGGATGACCCTGATGCCTCACATGACGCAGCAAAGTTATTGAATATATTGTCTAGTAATACTCAAAATGCACTTCATATGGCTGAGGCTGGCTACTTTAGGCCACTTGTGCAGTATTTGAAAGAAGGGTCTGACATGAACAAGATCCTAATGGCGACAGCTCTTTCAAGGTTGGAACTCCCTGATCACAGCAAACTTTCCCTTGGAGAAGATGGGGCAATTGAGCCACTTGTCAATATGTTCATTACTGGGAAACTTGAGTCCAAGTTATCAGCTCTAAACGCGCTGCAAAATCTGTCAACCAAGCCAGAAAACGTGCAGCGTCTGATCAGATCAGGAATTGCAGGATCTCTGCTGCAACTTCTTTTCTCTGTCACATCTGTCCTCATGACCTTGCGTGAGCCTGCATCAGCCATTCTTGCAAGAATTGCTCAGTCTGAATCCATCCTTGTCAATGAAGATGTGGCTCAGCAGATGCTTTCCCTTTTGAATCTTTCCAGCCCTATAATCCAGGGCCATTTATTAGAAGCTCTAAATAACATAGCCTCTCATCCTGGTGCATCCAGAGTGAGAAGCAAAATGAAGGAAAAAGGTGCACTTCAACTCCTCTTACCCTTTATGAAGGAAAACACCACCAAAGTCAGGAGTAAGGTCTTTCATTTGTTGTACACTCTCTCTAAAGATCTAACAGATGAGTTAACTGAACATCTTGATGAAACTCACCTCTTGAACATAGTTAACATAGTCTCAACATCAACATCAGACAGTGAAAGGGCTGCAGCTGTTGGCATACTCAGTAATCTTCCTGCTAGTAACAAAAAGGTGACTGATATACTGCAGAGGGCAAATTTGCTTCCCATTTTGATATCCATCATGTATACTATCACAGGAAGTAACTCATCCACAACAAATACCTTAGCAGAGAGTATTGCCAGTGTTATCATTCGCTTCACAAATTCATCAGACAAAAAACTGCAACTTCTCTCAGCTGAACAAGGGGTGATTCCTTTGCTTGTAAAACTGCTCTCAACCGGTTCACCAATCACAAAAGCAAGGGCTGCAGCCTCACTTGCACAACTATCTCAGAACTCTCTGTCTCTTAGAAAGTCTAGAAAGTCAAGGTGGTTGTGTGTTCCTCCCTCAGTGAATGCATACTGTGAAGTCCATGATGGATATTGCTTTGTCAACAGCACATTTTGTTTGGTCAAAGCAGGTGCTGTTTCTCCCCTCATCCAACTATTGGAAGATTCTGAGAGACAAGCAGTTGAAGCTGCTTTGCATGCTCTTTCAACTCTTCTGCAAGATGAAATCTGGGAAGGTGGTGTGAGTTCCATTGCCAAGTTATCAGGTGTGCAACCTATTATAAAGAGTCTAGAAGTTGGTGATGCAAAGGTTCAAGAAAAAGCAATATGGATGTTGGAGAGAATATTCAAAGTTGCAGAACATAGAGTGAAATATGGAGAATCTGCTCAGGTGGTTCTTATTGATCTTGCCCAGAAGAGTGATTCTAGATTGAAGTCAACAGTTGCAAAAGTATTGGCTGAGCTTGAGCTCTTGCAATCTCAATCAAGTTACTTCTGA 2493 0.4212 MEVVEKRNFSKLLSELIVLADEVASLAKNSEIEVHIFAEFAMLVEKFSPIFNDLRDENAVLDKPPIRKSLESVESELRRAKALTKNSNLRQPIKQIEDITHDIGRSFGLLLVASLEISMDFREKIGTLQRLLMNVRFDGSSSVASSPKSEASGSDVKLSGEIVEEVVNVSIDDVVLQLKNGNDEEFAVSLLRLKEFIRSERLDGGLINEEATLAILFNRLGSCKADNRLAIMRLLRSIALGNDEKKEKMVDIEFLSAVVKSLTRDSQERKEAVGLLLELSDIQAVRRRIGRIQGCIVMLVSILNGDDPDASHDAAKLLNILSSNTQNALHMAEAGYFRPLVQYLKEGSDMNKILMATALSRLELPDHSKLSLGEDGAIEPLVNMFITGKLESKLSALNALQNLSTKPENVQRLIRSGIAGSLLQLLFSVTSVLMTLREPASAILARIAQSESILVNEDVAQQMLSLLNLSSPIIQGHLLEALNNIASHPGASRVRSKMKEKGALQLLLPFMKENTTKVRSKVFHLLYTLSKDLTDELTEHLDETHLLNIVNIVSTSTSDSERAAAVGILSNLPASNKKVTDILQRANLLPILISIMYTITGSNSSTTNTLAESIASVIIRFTNSSDKKLQLLSAEQGVIPLLVKLLSTGSPITKARAAASLAQLSQNSLSLRKSRKSRWLCVPPSVNAYCEVHDGYCFVNSTFCLVKAGAVSPLIQLLEDSERQAVEAALHALSTLLQDEIWEGGVSSIAKLSGVQPIIKSLEVGDAKVQEKAIWMLERIFKVAEHRVKYGESAQVVLIDLAQKSDSRLKSTVAKVLAELELLQSQSSYF* 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0324 830 Gene3D - 331 677 IPR011989 -
Pvu5g0324 830 SUPERFAMILY ARM repeat 372 784 IPR016024 -
Pvu5g0324 830 SUPERFAMILY ARM repeat 171 426 IPR016024 -
Pvu5g0324 830 Gene3D - 171 327 IPR011989 -
Pvu5g0324 830 Gene3D - 690 828 IPR011989 -
Pvu5g0324 830 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 830 - -
Pvu5g0324 830 SMART arm_5 491 531 IPR000225 GO:0005515
Pvu5g0324 830 SMART arm_5 365 405 IPR000225 GO:0005515
Pvu5g0324 830 SMART arm_5 698 738 IPR000225 GO:0005515
Pvu5g0324 830 SMART arm_5 242 281 IPR000225 GO:0005515
Pvu5g0324 830 SMART arm_5 742 782 IPR000225 GO:0005515
Pvu5g0324 830 SMART arm_5 406 449 IPR000225 GO:0005515
Pvu5g0324 830 SMART arm_5 626 666 IPR000225 GO:0005515
Pvu5g0324 830 SMART arm_5 324 364 IPR000225 GO:0005515
Pvu5g0324 830 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 376 418 IPR000225 GO:0005515
Pvu5g0324 830 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN-LIKE 1 830 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0324 Pvu-Chr5 2878551 2883354 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0324 181 830 U-box Gene Family AT1G76390 28.963 1.03e-48 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0324 K08332 - gmx:100791453 1345.87