Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu5g0297 | ATGGAACATTATGCAGCAACGATTCCAGCATCTGCAGAAGTCATTGATTCTCTTAAAACGTTCTCAATTTCACCTTTCTTGAAAAAGGAAATTGAGAAGTGCAATATTTGCTTGGAAAATGTTGGCTTTAGAGAGAATGAAGAGAATGTGAAGTTATCATCGTTGCCATGTGAACATGTTTTTCATCATCTTTGTATTGTAAAGTGGTTGCAGACAAGTCACACTTGTCCGTTATGTCGTTACCCTATGCCCGTTCGTAATAACTGA | 267 | 0.3745 | MEHYAATIPASAEVIDSLKTFSISPFLKKEIEKCNICLENVGFRENEENVKLSSLPCEHVFHHLCIVKWLQTSHTCPLCRYPMPVRNN* | 89 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu5g0297 | 88 | Pfam | Ring finger domain | 33 | 80 | IPR001841 | - | |
Pvu5g0297 | 88 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 9 | 84 | - | - | |
Pvu5g0297 | 88 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 86 | IPR013083 | - | |
Pvu5g0297 | 88 | PANTHER | F6A14.12 PROTEIN-RELATED | 9 | 84 | - | - | |
Pvu5g0297 | 88 | SMART | ring_2 | 34 | 79 | IPR001841 | - | |
Pvu5g0297 | 88 | SUPERFAMILY | RING/U-box | 14 | 85 | - | - | |
Pvu5g0297 | 88 | ProSiteProfiles | Zinc finger RING-type profile. | 34 | 80 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu5g0297 | Pvu-Chr5 | 2621686 | 2621952 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pvu5g0297 | 6 | 84 | C3H Transcription Factor Family | AT5G15820 | 37.209 | 1.13e-12 | 59.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu5g0297 | - | - | pvu:PHAVU_005G028400g | 190.274 |