Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0297 ATGGAACATTATGCAGCAACGATTCCAGCATCTGCAGAAGTCATTGATTCTCTTAAAACGTTCTCAATTTCACCTTTCTTGAAAAAGGAAATTGAGAAGTGCAATATTTGCTTGGAAAATGTTGGCTTTAGAGAGAATGAAGAGAATGTGAAGTTATCATCGTTGCCATGTGAACATGTTTTTCATCATCTTTGTATTGTAAAGTGGTTGCAGACAAGTCACACTTGTCCGTTATGTCGTTACCCTATGCCCGTTCGTAATAACTGA 267 0.3745 MEHYAATIPASAEVIDSLKTFSISPFLKKEIEKCNICLENVGFRENEENVKLSSLPCEHVFHHLCIVKWLQTSHTCPLCRYPMPVRNN* 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0297 88 Pfam Ring finger domain 33 80 IPR001841 -
Pvu5g0297 88 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 9 84 - -
Pvu5g0297 88 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Pvu5g0297 88 PANTHER F6A14.12 PROTEIN-RELATED 9 84 - -
Pvu5g0297 88 SMART ring_2 34 79 IPR001841 -
Pvu5g0297 88 SUPERFAMILY RING/U-box 14 85 - -
Pvu5g0297 88 ProSiteProfiles Zinc finger RING-type profile. 34 80 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0297 Pvu-Chr5 2621686 2621952 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0297 6 84 C3H Transcription Factor Family AT5G15820 37.209 1.13e-12 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0297 - - pvu:PHAVU_005G028400g 190.274