Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0296 ATGGGAACCGTAGAAGGAAAAGTGTATTCGTACCACTGTGAGATGCGAACTAAAGAAGTGAGAGTGAAGATGAAACTCAAAGACATATTGAGGGTTGATGCGAATATCATTGTTCGATATTATAATCATCATCTACATGCTACTCAAACATCAACCTTATTGAAAACTTCAATTCCCATTAGCTTTCAGAATTTCTTTGAAAATAATGCAGATTTTTTGAGGACTGTGTTGTTCGACCCACGTTGTTCTTACTGCTTCATCCCAGAAATAGTTGATCCAATATTAGCAACAATTGTTAATATGATTAAAGTAGCCTTGGAATTTGGTGGTGGTCCTGAGTCTGTAGATTCAGAATGCAAAGAATTTCCTATGAATTTAAACATCATTGTGGATGTAGTTGCAGATGTAGAAAGTGAAGAGGAAGAGGAAGAGGAAGAGGAAGACGTAGAGACAGAGGTAGAGGCAGAGGTAGAAGAAGAGGTAGAGACAGAGGAAGAGATGGAACATTATGCAGCAACGATTCCAGCATCTGCAGAAGTCATTGATTCCCTTAAAACATTCTCAATTTCACCTTTCTTGAAAAAGGAAACTGAGAAGTGCAATATTTACTTGGAAAATGTTGGCTTTAGAGAGAATGAAGAGAATGTGAAGTTATCATCGTTGCCATGTGAACATGTTTTTCATCATCTCTGTATTGTAAATTGGCTGCAGACAAGTCACACTTGTCCGTTATGTCGTTACCCTATGCCCGTTCGTAATAACTGA 765 0.3791 MGTVEGKVYSYHCEMRTKEVRVKMKLKDILRVDANIIVRYYNHHLHATQTSTLLKTSIPISFQNFFENNADFLRTVLFDPRCSYCFIPEIVDPILATIVNMIKVALEFGGGPESVDSECKEFPMNLNIIVDVVADVESEEEEEEEEEDVETEVEAEVEEEVETEEEMEHYAATIPASAEVIDSLKTFSISPFLKKETEKCNIYLENVGFRENEENVKLSSLPCEHVFHHLCIVNWLQTSHTCPLCRYPMPVRNN* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0296 254 Pfam RING-H2 zinc finger domain 212 246 IPR024766 GO:0008270
Pvu5g0296 254 ProSiteProfiles Zinc finger RING-type profile. 200 246 IPR001841 -
Pvu5g0296 254 SMART ring_2 200 245 IPR001841 -
Pvu5g0296 254 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 126 250 - -
Pvu5g0296 254 Coils Coil 136 166 - -
Pvu5g0296 254 PANTHER F6A14.12 PROTEIN-RELATED 126 250 - -
Pvu5g0296 254 SUPERFAMILY RING/U-box 180 251 - -
Pvu5g0296 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 252 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0296 Pvu-Chr5 2615246 2616010 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0296 156 250 C3H Transcription Factor Family AT1G18760 34.737 1.56e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0296 - - pvu:PHAVU_005G027800g 406.757