Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0294 GTAGAAACAGAGGAAGAGGTAGAGACAGAGGAAGAGACGGAGGAAGAGATTGAACATTATGCAGCAACGATTCCAGCATCTGCAGAAGCCATTGATTTCCTTAAAACGTTCTCAATTTCACCTTTCTTGAAAATGGAAATTGAGAAGTGCAGTATTTGCTTGGAAAATGTTGGCTTTAGAGAGAATGAAGAGAATGTGAAGTTATCGTCGTTGTCATGTGAACATGTTCTTCATCATCTCTGTATTGTAAAGTGGTTGCAGACAAGTCACACTTGTCCGTTATGTCGTTATCCTATGCTTATTCGTCATAACTGA 315 0.3937 VETEEEVETEEETEEEIEHYAATIPASAEAIDFLKTFSISPFLKMEIEKCSICLENVGFRENEENVKLSSLSCEHVLHHLCIVKWLQTSHTCPLCRYPMLIRHN* 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0294 104 PANTHER F6A14.12 PROTEIN-RELATED 5 99 - -
Pvu5g0294 104 Pfam Ring finger domain 49 96 IPR001841 -
Pvu5g0294 104 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 5 99 - -
Pvu5g0294 104 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 100 IPR013083 -
Pvu5g0294 104 ProSiteProfiles Zinc finger RING-type profile. 50 96 IPR001841 -
Pvu5g0294 104 SUPERFAMILY RING/U-box 34 101 - -
Pvu5g0294 104 SMART ring_2 50 95 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0294 Pvu-Chr5 2604780 2605094 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0294 43 96 C3H Transcription Factor Family AT4G12190 44.444 1.04e-11 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0294 - - pvu:PHAVU_005G0282001 193.356