Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0293 GTAGAATGCGACGAGGAAGAGGAAGAGGAAGAGGAAGAGGTAGAGGAAGAGGTAGAGACAGATGTAGAGACAGATGTAGAGACAGAGGAAGAGATAGAGGAAGAGGTAGAGACAGATGTAGAGACAGATGTAGAGACAGAGGAAGAGATAGAGGAAGAGACAGAGGAAGAGATGGAACATTATGCAGCAACGATTCCGGCATCTGCAGAAGCCATTGATTCCCTTAAAACGTTCTCAATTTCACCTTTCTTAAAATTGGAAACTGAGAAGTGCAGTATTTGCTTGGAAAATGTTGGCTTTAGAGAGAATGAAGAGAATGTGAAGTTATCGTTGCTGCCATGTGAACATGTTTTTCATCATCTCTGTATTGTAAAGTGGTTGCAGAGAAGTCACACTTGTCCGTTATGTCGTTATCCTATGCTTGTTAGTCATAATTGA 438 0.4155 VECDEEEEEEEEEVEEEVETDVETDVETEEEIEEEVETDVETDVETEEEIEEETEEEMEHYAATIPASAEAIDSLKTFSISPFLKLETEKCSICLENVGFRENEENVKLSLLPCEHVFHHLCIVKWLQRSHTCPLCRYPMLVSHN* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0293 145 MobiDBLite consensus disorder prediction 1 46 - -
Pvu5g0293 145 SUPERFAMILY RING/U-box 71 142 - -
Pvu5g0293 145 SMART ring_2 91 136 IPR001841 -
Pvu5g0293 145 Pfam Ring finger domain 90 137 IPR001841 -
Pvu5g0293 145 Coils Coil 44 64 - -
Pvu5g0293 145 PANTHER F6A14.12 PROTEIN-RELATED 8 140 - -
Pvu5g0293 145 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 140 - -
Pvu5g0293 145 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 141 IPR013083 -
Pvu5g0293 145 ProSiteProfiles Zinc finger RING-type profile. 91 137 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0293 Pvu-Chr5 2592751 2593188 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0293 84 137 C3H Transcription Factor Family AT4G12190 48.148 6.94e-13 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0293 - - pvu:PHAVU_005G028000g 177.948