Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0292 TCAGAATGCAAAGAATTTCCTTTGAATTTAAACATCATCGTGGATGTAGTTGTAGATGTAGAAAGTGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGTAGAGACAGAGGTAGAGACAGAGGTAGAGGTAGAGGAAGAGGTAGAGACAGAGGAAGAGACAGAGGAAGAGATGGAACATTATGCAGCAACGATTCCAGCATCTGCAGAAGTCATTGATTCCCTTAAAACGTTCTCAATTTCACCTTTCTTGAAAAAGGAAACTGAGAAGTGCAATATTTGCTTGGAAAATGTTGGCTTTAGAGAGAATGAAGAGAATGTGAAGTTATCATTGTTGCCATGTGAACATGTTTTTCATCATCTTTGTATTGTAAAGTGGTTGCAGACAAGTCACACTTGTCTGTTATGTCGTTACCCTATGCCCGTTCGTAATAACTGA 441 0.3968 SECKEFPLNLNIIVDVVVDVESEEEEEEEEEEEEVETEVETEVEVEEEVETEEETEEEMEHYAATIPASAEVIDSLKTFSISPFLKKETEKCNICLENVGFRENEENVKLSLLPCEHVFHHLCIVKWLQTSHTCLLCRYPMPVRNN* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0292 146 Pfam Ring finger domain 91 138 IPR001841 -
Pvu5g0292 146 PANTHER F6A14.12 PROTEIN-RELATED 23 142 - -
Pvu5g0292 146 MobiDBLite consensus disorder prediction 17 58 - -
Pvu5g0292 146 Coils Coil 13 48 - -
Pvu5g0292 146 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 144 IPR013083 -
Pvu5g0292 146 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 23 142 - -
Pvu5g0292 146 SMART ring_2 92 137 IPR001841 -
Pvu5g0292 146 MobiDBLite consensus disorder prediction 18 58 - -
Pvu5g0292 146 SUPERFAMILY RING/U-box 72 143 - -
Pvu5g0292 146 ProSiteProfiles Zinc finger RING-type profile. 92 138 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0292 Pvu-Chr5 2589471 2589911 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0292 67 142 C3H Transcription Factor Family AT1G18760 38.158 5.68e-11 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0292 - - pvu:PHAVU_005G028000g 209.534