Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0291 ATGGGAACCGTAGAAGGAAGAGTGCATTCGTACCACTATGAGATGCGAACTGAAGAAGTGGGAGTGAAGATCAAACTCACAGACATATTGAGGGTTGATGTGGCTATCATTGTTCGATATTATAATCATCATCTACATGCTATTCAAACATCAACCTTATTAAAAACTTCAACTCCCATTAGCTGTCAGAATTTCTTTGAAAATAATGCAGATTTCTTGAGGAGTGTGTTGTTCGACCCACGCTGTTCTTACTGCTTCATCCCAGAAATTGTTTACCCAGCATCGCAAAAAATTGTTAATATGATTCAAGGAGCCTTGGAATTTGGTGGTGATTCTGAGTCTGTGGATTCAGAATGCAAAGAATTGCCTTTGAATTTAGACATCATCGTGGATGTAGTTGCAGATGTAGAATGCGACGAGGAAGAGGAAGAGGTAGAGACAGATGTAGAGGAAGAGGTAGAGACAGATGTAGAGACAGAGGAAGAGACAGAGGAAGATACAGAGGAAGAGACAGAGGAAGAGATAGAGGAAGAGATGGAACATTATGCAGCAACGATTCCAGCATCTGCAGTTGCCATTGATTCTCTTAAAACGTTCTCAATTTCACCTTTCTTGAAAATGGAAACTGAGAAGTGCAGTATTTGCTTGGAAAATGTTGGCTTTAGAGAGGATGAAGAGAATGTGAAGTTATCGTTGTTGCCATGTGAACATGTTTTTCATCATCTCTGTATTGTAAAGTGGTTGCAGACAAGTCACACTTGTCCGTTATGTCGTTATCCTATGCTTGTTAGTCATAACTGA 801 0.3995 MGTVEGRVHSYHYEMRTEEVGVKIKLTDILRVDVAIIVRYYNHHLHAIQTSTLLKTSTPISCQNFFENNADFLRSVLFDPRCSYCFIPEIVYPASQKIVNMIQGALEFGGDSESVDSECKELPLNLDIIVDVVADVECDEEEEEVETDVEEEVETDVETEEETEEDTEEETEEEIEEEMEHYAATIPASAVAIDSLKTFSISPFLKMETEKCSICLENVGFREDEENVKLSLLPCEHVFHHLCIVKWLQTSHTCPLCRYPMLVSHN* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0291 266 MobiDBLite consensus disorder prediction 140 173 - -
Pvu5g0291 266 Pfam Ring finger domain 211 258 IPR001841 -
Pvu5g0291 266 SUPERFAMILY RING/U-box 192 263 - -
Pvu5g0291 266 Coils Coil 150 181 - -
Pvu5g0291 266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 264 IPR013083 -
Pvu5g0291 266 ProSiteProfiles Zinc finger RING-type profile. 212 258 IPR001841 -
Pvu5g0291 266 PANTHER F6A14.12 PROTEIN-RELATED 122 261 - -
Pvu5g0291 266 SMART ring_2 212 257 IPR001841 -
Pvu5g0291 266 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 122 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0291 Pvu-Chr5 2571531 2572331 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0291 205 258 C3H Transcription Factor Family AT4G12190 48.148 1.53e-11 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0291 - - pvu:PHAVU_005G027800g 355.14