Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0290 ATGGGAACCGTAGAAGGAAAAGTGCATTCGTACCATTGTGAGATGCGAACTAAAGAAGTGAGAGTGAAGATGAAACTCAAAGACATATTGAGGTTTGATGTGAATATCATTGTTCGATATTATAATCATCATCTACATGCTACTCAAACATCAACCTTATTGAAAACTTCAATTCCCATTAGCTTTCAGAATTTCTTTGAAAATAATGCAGATTTCTTGAGGAGTGTGTTGTTCGACCCACGTTGTTCTTACTGCTTCATCCCAGAAATACTTGATCCAATATCAGCAAAAATTGTTAATATGATTAAAGTAGCCTTGGAATTTGGTGGTGGTCCTGAGCCTGTAGATTCAGAATGCAAAGAATTTCCTTTGAATTTAAACATCATCGTGGATGTAGTTGCAGATGTAGAAAGTGAAGAGGAAGAGGAAGAGGAAGAGGAAGACGTAGAGACAGAGGTAGAGGCAGAGGTAGAGGAAGAGGCAGAGGTAGAGGAAGATGTAGAGACAGAGGTAGAGACAGAGGAAGAGACAGAGGAAGAGATGGAAAAAATTGTAGCAATGATTCCAGCATCTGCAGAAGTCATTGATTCCCTCAAAACATTCTCAATTTCACCTTTCTTGAAAAAGGAAACTGAGAAGTGCAATATTTGCTTGGAAAATGTTGGCTTTAGAGAGAATGAAGAGAATGTGAAGTTATCATCGTTGCCATGTGAACATGTTTTTCATCATCTTTGTATTGTAAAGTGGCTGCAGACAAGTCACACTTGTCCGTTATGTCGTTACCCTATGCCCGTTCGTAATAATTGA 807 0.3854 MGTVEGKVHSYHCEMRTKEVRVKMKLKDILRFDVNIIVRYYNHHLHATQTSTLLKTSIPISFQNFFENNADFLRSVLFDPRCSYCFIPEILDPISAKIVNMIKVALEFGGGPEPVDSECKEFPLNLNIIVDVVADVESEEEEEEEEEDVETEVEAEVEEEAEVEEDVETEVETEEETEEEMEKIVAMIPASAEVIDSLKTFSISPFLKKETEKCNICLENVGFRENEENVKLSSLPCEHVFHHLCIVKWLQTSHTCPLCRYPMPVRNN* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0290 268 ProSiteProfiles Zinc finger RING-type profile. 214 260 IPR001841 -
Pvu5g0290 268 SUPERFAMILY RING/U-box 194 265 - -
Pvu5g0290 268 Pfam Ring finger domain 213 260 IPR001841 -
Pvu5g0290 268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 266 IPR013083 -
Pvu5g0290 268 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 127 264 - -
Pvu5g0290 268 MobiDBLite consensus disorder prediction 136 178 - -
Pvu5g0290 268 Coils Coil 136 184 - -
Pvu5g0290 268 SMART ring_2 214 259 IPR001841 -
Pvu5g0290 268 PANTHER F6A14.12 PROTEIN-RELATED 127 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0290 Pvu-Chr5 2568004 2568810 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0290 185 264 C3H Transcription Factor Family AT1G18760 37.500 1.30e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0290 - - pvu:PHAVU_005G027800g 442.965