Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0289 ATGGGAACCGTAGAAGGAAGAGTGCAGTCGTACCACTATGAGATGCGAACTGAAGAAGTGGGAGTGAAGATCAAACCCACAGACATATTGAGGGTTGATATGGCTATCATTGTTCGATATTATAATCATCATCTACATGCTATTCAAACATCAACCTTATTAAAAACTTCAACTCCCATTAGCTGTCAGAATTTCTTTGAAAATAATGTAGATTTCTTGAGGAATTCTGTGGATTCAGAAGGCAAAGAATTGCCTTTGAATTTAGACATCATCGTGGATGTAGTTGCAGATGTAGAATGCGACAAGGAAGAGGAAGAGGAAGAGGTAGAGGAAGAGGTGGAGACAAATGTAGAGACAGAGGAAGAGACAGAGGAAGAGATGAAACATTATGCAGCAACGATTCCAGCATCTGCAGAAGCCATTGATTCCCTTAAAACGTTATCAATTTCACCTTTATTGAAAATGGAAACTGAGAAGTGCAGTATTTGTTTGGAAAATATTGGCTTTAGAGAGAATGAAGAGAATGTGAAGTTATCGTCGTTGTCATGTGAACATGTTTTTCATCATCTCTGTATTGTAAAGTGGTTGCAGACAAGTTACACTTGTCCGTTATGTCGTTATCCTATGCTTGTTCGTCATAACTGA 645 0.3845 MGTVEGRVQSYHYEMRTEEVGVKIKPTDILRVDMAIIVRYYNHHLHAIQTSTLLKTSTPISCQNFFENNVDFLRNSVDSEGKELPLNLDIIVDVVADVECDKEEEEEEVEEEVETNVETEEETEEEMKHYAATIPASAEAIDSLKTLSISPLLKMETEKCSICLENIGFRENEENVKLSSLSCEHVFHHLCIVKWLQTSYTCPLCRYPMLVRHN* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0289 214 Coils Coil 95 126 - -
Pvu5g0289 214 ProSiteProfiles Zinc finger RING-type profile. 160 206 IPR001841 -
Pvu5g0289 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 210 IPR013083 -
Pvu5g0289 214 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 59 209 - -
Pvu5g0289 214 SMART ring_2 160 205 IPR001841 -
Pvu5g0289 214 PANTHER F6A14.12 PROTEIN-RELATED 59 209 - -
Pvu5g0289 214 Pfam Ring finger domain 159 206 IPR001841 -
Pvu5g0289 214 SUPERFAMILY RING/U-box 140 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0289 Pvu-Chr5 2558179 2558921 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0289 153 206 C3H Transcription Factor Family AT4G12190 48.148 2.38e-12 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0289 - - pvu:PHAVU_005G027700g 366.696