Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0287 ACGATTTCGGCATCTGCAGAAGCCATTGATTCCCTTAAAACGTTCTCAATTTCACCTTTCTTAAAATTGGAAACTGAGAAGTGCAGTATTTGCTTGGAAAATGTTGGCTTTAGAGAGAATGAAGAGAATGTGAAGTTATCGTTGTTGCCATGTGAACATGTTTTTCATCATCTCTATATTGTAAAGTGGTTGCAGACAAGTCACACTTGTCCGTTATGTCGTTATCCTATGCTTGTTAGTCATAATTGA 249 0.3695 TISASAEAIDSLKTFSISPFLKLETEKCSICLENVGFRENEENVKLSLLPCEHVFHHLYIVKWLQTSHTCPLCRYPMLVSHN* 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0287 82 Pfam Ring finger domain 27 74 IPR001841 -
Pvu5g0287 82 ProSiteProfiles Zinc finger RING-type profile. 28 74 IPR001841 -
Pvu5g0287 82 SUPERFAMILY RING/U-box 8 79 - -
Pvu5g0287 82 SMART ring_2 28 73 IPR001841 -
Pvu5g0287 82 PANTHER F6A14.12 PROTEIN-RELATED 3 77 - -
Pvu5g0287 82 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 3 77 - -
Pvu5g0287 82 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 78 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0287 Pvu-Chr5 2552818 2553068 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0287 21 74 C3H Transcription Factor Family AT4G12190 44.444 6.89e-11 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0287 - - pvu:PHAVU_005G0282001 153.295