Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0285 ATGTCCAGCGACTCCTCCTTCGCGGACCACAAGCTCTGCGGTTTCCTCTGTGCGGTTCTCACAGTCAGTCACCGCGACTCTGATCCAGCCTTCGCCGACCGCTGCGAAGTCTTCAACGACGATGGCGAGGTCGGTTTCCGCTCCCAAACCGGTGTCGATTTGTTTCCGGTGCTGAATTCGTCGCAATGCGGCGGCGGAGGATCGAAAACCAAGAGGACGCACAGCGTCGGGATGGTGAACGGGAGCATGAGCGTGGTTCACCAGCTCCATGCTATGGTCACCCGCAAGTGCATGAGAATCGACGCACGCGTGGTGTGCGTCGAGGCGCCTAGGGTTGTGCTGCTGATTGACGTGTACCTTCCTATTAACGTGTGGAGTGGCTGGCAGTTCCCGCGGTCGGGGGCGGTTGCCGCCGCCGTTTTTCGTCATTTGAGCTGTGATTGGGATGAGCGAAGTTCAATGCTTTCATATCCAGATTATTGTAGAAAGACTCATGGAGCAAATGAGAGTATTTGGAACCTTTCTGATTGTCATGTACTTTGTTGCAAGCTCCATTCCCATGTTAGCAGTTCTTCAAGAAAAAGGCTATTTGAACTTCATGAACTTTTCAAGACACTACCTGGCGTTGGAAAACAGCGGATGTTTAATAGCTCGAAAATAATTCCTATGGATCACTCATCCAGATCAGGCATCTGGGAAATATCTGATGATATTTTAACTAAAATTTTATCTTCCCTAGACCCAATGGACCTCACTAGGGTTTCTGAAACATGTCATCATCTAAGATCATTGGCTGCTTCAGTAATGCCTTGTACAAAGTTAAATCTGTTTCCTCATCAGCGGGCAGCAGTTGAGTGGATGTTGCATCGTGAGCGAAATGCTGAGCTTTTGCCACACCCTTTATATGCAGTTCTCTCAACTGAAGATGGCCTTAGTTTCCACGTAAATACTGTTTCTGGTGAAATTGTCACAGGGGAAGCTCCCACCATCAGGGATTTTCGGGGAGGAATGTTTTGTGATGAGCCTGGATTGGGTAAGACTGTAACAACTCTCTCTCTTATTATGAAGACACGAGGTACATTGGCAGATCCACCGGATGGGGCACAAGTTGTCTGGTGTAAACATAATGGTAATCAGAAATGTGGTTATTATGAGATCAGTGGTAATAACATAACTGGTTGTTCTACATTGGGTAAAAGGGATGTGAGCCAAGATATCAGTAGAACTAGTGATGACCATGATTATTCCTCCAAAAGAGCCAGAAGGTCAAATCCTAATCAGCAAATCACTAAACTTCAGGGTTCATGTTCCATGGAAGTGAAGAAATCACCTGTAAAGGCATGCTTTAAGGAATCTATGCATTCAAATCAGTACACTAGGAGTTTGAGCCGGATAAAGAAAAATCTATGCTTCACATATGAAGATGAAGCTATGATTTCCAAGGAAAGAGAAATTGGTGAAGGATTAATTGAAGCAAAGCATGCATCAGATGTTACACCTCATGTATCTCAAAAGAAGCTGCCTGGGAAGCCTGAAGGTGATCTTTTTGAGTACAGTGATACATGGATTCAGTGTGATGCTTGTCACAAGTGGCGAAAGCTTGCAGACAATAGTATGGCTAGTTCTAGTGCAGCGTGGTTTTGTAGTATGAACACTGACCCTCTTTATGAAAGTTGTAGTGTCCCTGAACAACATTTTCATAATACCTCAAAGATAACACACTTGCCAGGGTTTCACTTAAAAGGAACTCATGGCGGTGAGAGACAAAATGTTTCTTTTTTCATTAGTGTGCTCAAGGAGCACCACTCATTGATAAATTCTCAGACAAGGAGAGCCCTAACGTGGTTGGCTAAAATTTCAACAGACAAGCTTGCAGGAATGGAAACAAATGGAATAAGAGGTCCCTTTTTAAACACGTGTACTGCATCTAGTAGACATTTTAATGCGTTCCACAAAGTATTTCAAGCATTTGGCCTCTTAAAGAGAGTAGATAAAGGTGTGTGCAAGTGGTTCTATCCTCAACATCTCAACAATTTGACTTTTGATGTGACTGCCCTTGGCATGGCACTCCGTGAGCCTATAGATTTTGTTAGGTTATACTTGTCAAGAGCTACCCTCGTAGTTGTTCCTGCAAACTTGGTTGATCATTGGAAAACACAAATAGAAAAGCATGTGAGGCCTGGTCAATTGCGGATTTATGTTTGGACTGATCACCGGAAGCCATCTTTGCATTGTCTTGCATGGGATTACGATGTTGTCTTAACCACTTTTAGTCGTTTGAGTGCAGAGTGGGGCCCTCGTAAGAAGAGTGTTTTGATGCAAGTGCATTGGTTTAGAGTAATTTTAGATGAGGGGCACACTCTTGGGTCTAGCCTGAACTTAACAAACAAGTTGCAAATGGCTATTTCATTGATAGCTTCTAATCGATGGATACTAACAGGAACTCCTACACCGAACACTCCTAACAGCCAACTTCCTCATCTGCAACCATTGCTAAGGTTCCTTCATGAAGAGTCTTATGGACTGAATCAAAAGTCATGGGAAGCTGGTGTGCTTAGGCCATTTGAAGCAGAAATGGAGGAAGGAAGGTCTCGTCTGTTACATCTACTTCACAAATGCATGATTAGTGCTAGAAAGGCAGATTTACAAAGCATTCCACCATGCATCAAGAAAATTGTTTATCTGGATTTTAATGAGGAGCATGCTAGAAGTTACAATGAATTGGTAATCACAGTACGGCGTAATATATTGATGGCTGATTGGAATGATCCCTCACATGTTGAGAGTCTACTGAATCCAAAACAGTGGAAGTTTCGCAGGGCAACTATAAAAAATGTCAGGCTTTCATGCTGTGTTGCTGGACATATTAAAGTTACACATGCTGGAGAAGATATTCAAGAAACAATGGATATATTAGTACAAAGTGGTCTGGATCCTACTTCTGGAGAGTATTCCTCCATAAGATGTAATCTCTTGTATGGTGGTCATTGTGTCAGGTGCAAGGAATGGTGCCGCCTTCCGGTCATTACACCATGTTGGCATCTGTTGTGCCTTGATTGTGTTTCTATAGACCACACAAAGTGTACTTATCCTGGCTGCAGTAAATTATATGAGATGCAAAGTAGACTTCCCCGACCTGAAAATCCTAATCCGAAGTGGCCAGTACCCAAAGATCTTATTGAGCTACAACCTTCATATAAGCAGGATAATTGGGATCCGGATTGGCAATCTACATCTAGTACTAAAGTCTCCTATCTTGTCCAGAAGTTGAAAGCTTTGCAAGGAACCAATGAAGAGACCAGCTTCAGTAGCAATGATGAGATGCCCATTGAGAATAGTTTCTCTCTGCATAGAGATGATAAATCAGCATTTCAGAAATGTTCGAAGAGCAGCACAAAGACCAATTTCAACCTCGAGAAAGTTCTGATATTTTCTCAATTTCTTGAGCATATACATGTCATTGAACAGCAGTTGACTATTGCTGGTATCAAATATACTGGAATGTATAGCCCAATGCATTCCAGCAACAAGAAGAAGTCTTTAGCTGTGTTCCAACATGATTCAAGTTGTATGGCGCTCCTGATGGATGGAAGTGCTGCATTGGGTCTTGACTTGAGTTTTGTTACGCATGTATTTCTAATGGAGCCAATTTGGGACAGAAGTATGGAGGAGCAAGTAATTAGTCGTGCTCACCGTATGGGTGCTTCTCGTCCTATTCACGTGGAAACACTAGCAATGCGTGGTACAATTGAAGAGCAAATGCTAGGCTTTTTACAGGAAGCTGATAAATGTAGAAGAACGCCAATTAAGGATGTTGCCGAATCTGAAGATGATGGTGGGGGACGAGGATATAAATCATTGCATGATTTTGCGGAAAGCAGTTATCTATTGAAACTTAGATCTGTGTATACTAATTCAGAAAGTCCAGAAGGTGTTTTGATTGATCAACATCAAGCAAGTACTAACTAA 3969 0.4278 MSSDSSFADHKLCGFLCAVLTVSHRDSDPAFADRCEVFNDDGEVGFRSQTGVDLFPVLNSSQCGGGGSKTKRTHSVGMVNGSMSVVHQLHAMVTRKCMRIDARVVCVEAPRVVLLIDVYLPINVWSGWQFPRSGAVAAAVFRHLSCDWDERSSMLSYPDYCRKTHGANESIWNLSDCHVLCCKLHSHVSSSSRKRLFELHELFKTLPGVGKQRMFNSSKIIPMDHSSRSGIWEISDDILTKILSSLDPMDLTRVSETCHHLRSLAASVMPCTKLNLFPHQRAAVEWMLHRERNAELLPHPLYAVLSTEDGLSFHVNTVSGEIVTGEAPTIRDFRGGMFCDEPGLGKTVTTLSLIMKTRGTLADPPDGAQVVWCKHNGNQKCGYYEISGNNITGCSTLGKRDVSQDISRTSDDHDYSSKRARRSNPNQQITKLQGSCSMEVKKSPVKACFKESMHSNQYTRSLSRIKKNLCFTYEDEAMISKEREIGEGLIEAKHASDVTPHVSQKKLPGKPEGDLFEYSDTWIQCDACHKWRKLADNSMASSSAAWFCSMNTDPLYESCSVPEQHFHNTSKITHLPGFHLKGTHGGERQNVSFFISVLKEHHSLINSQTRRALTWLAKISTDKLAGMETNGIRGPFLNTCTASSRHFNAFHKVFQAFGLLKRVDKGVCKWFYPQHLNNLTFDVTALGMALREPIDFVRLYLSRATLVVVPANLVDHWKTQIEKHVRPGQLRIYVWTDHRKPSLHCLAWDYDVVLTTFSRLSAEWGPRKKSVLMQVHWFRVILDEGHTLGSSLNLTNKLQMAISLIASNRWILTGTPTPNTPNSQLPHLQPLLRFLHEESYGLNQKSWEAGVLRPFEAEMEEGRSRLLHLLHKCMISARKADLQSIPPCIKKIVYLDFNEEHARSYNELVITVRRNILMADWNDPSHVESLLNPKQWKFRRATIKNVRLSCCVAGHIKVTHAGEDIQETMDILVQSGLDPTSGEYSSIRCNLLYGGHCVRCKEWCRLPVITPCWHLLCLDCVSIDHTKCTYPGCSKLYEMQSRLPRPENPNPKWPVPKDLIELQPSYKQDNWDPDWQSTSSTKVSYLVQKLKALQGTNEETSFSSNDEMPIENSFSLHRDDKSAFQKCSKSSTKTNFNLEKVLIFSQFLEHIHVIEQQLTIAGIKYTGMYSPMHSSNKKKSLAVFQHDSSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIHVETLAMRGTIEEQMLGFLQEADKCRRTPIKDVAESEDDGGGRGYKSLHDFAESSYLLKLRSVYTNSESPEGVLIDQHQASTN* 1323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0285 1322 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 776 1288 IPR027417 -
Pvu5g0285 1322 MobiDBLite consensus disorder prediction 402 435 - -
Pvu5g0285 1322 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 32 1293 - -
Pvu5g0285 1322 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 266 358 IPR027417 -
Pvu5g0285 1322 Pfam SNF2-related domain 279 920 IPR000330 GO:0005524|GO:0140658
Pvu5g0285 1322 CDD SF2_C_SNF 1139 1244 - -
Pvu5g0285 1322 MobiDBLite consensus disorder prediction 404 420 - -
Pvu5g0285 1322 MobiDBLite consensus disorder prediction 421 435 - -
Pvu5g0285 1322 Gene3D - 1057 1295 IPR027417 -
Pvu5g0285 1322 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 669 834 IPR014001 -
Pvu5g0285 1322 SMART ultradead3 272 845 IPR014001 -
Pvu5g0285 1322 Gene3D - 517 569 - -
Pvu5g0285 1322 Gene3D - 683 878 IPR038718 -
Pvu5g0285 1322 ProSiteProfiles Zinc finger CW-type profile. 516 567 IPR011124 GO:0008270
Pvu5g0285 1322 PANTHER OS01G0952200 PROTEIN 32 1293 - -
Pvu5g0285 1322 CDD DEXDc_SHPRH-like 698 875 - -
Pvu5g0285 1322 ProSitePatterns Zinc finger RING-type signature. 1012 1021 IPR017907 -
Pvu5g0285 1322 Pfam CW-type Zinc Finger 521 564 IPR011124 GO:0008270
Pvu5g0285 1322 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1130 1280 IPR001650 -
Pvu5g0285 1322 CDD RING-HC 997 1021 - -
Pvu5g0285 1322 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 702 873 IPR027417 -
Pvu5g0285 1322 Pfam F-box domain 234 268 IPR001810 GO:0005515
Pvu5g0285 1322 Pfam Helicase conserved C-terminal domain 1137 1234 IPR001650 -
Pvu5g0285 1322 SMART helicmild6 1152 1234 IPR001650 -
Pvu5g0285 1322 SUPERFAMILY F-box domain 224 267 IPR036047 GO:0005515
Pvu5g0285 1322 SMART fbox_2 234 274 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0285 Pvu-Chr5 2522702 2533705 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0285 276 355 RAD5 or RAD16-like Gene Family AT5G22750 32.184 7.33e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pvu5g0285 SNF2_N 1.7e-98 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0285 - - gmx:100803102 2331.98