Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0274 ATGAGCATGTTAGGCCTGAGAGACCTAGTTCTCATAGCTCAAACCCCTTCCCTGCACCAGCACCACCACCACCACCACCACCAGCACCAAGGCCAACAACAACCCATCTCAGAGAACCAAACTCCCAACCTTCCTCTGCCTTCTTCAGCCGCTCTCAGTGTTGGCTTTGGCATTTTCCCTCTCCTCACTGCCACACCCTGTGTGCCACACCCCCACCAAACCAATGAGATTCAAGAGTGTGGCGGCGGCGGCGGCGGTGCCGCCACCACCACCAACTACTGGAACCTCAAGATGTGCCCAGAAGTGAATCCTCCGAAGAAGGGTGTGATGAACATGGATGATGATGAGGATGAAGACGATGAGAGACATCATCAGCATAAGGGAGTGATGGAGAGTGAGGAAAACGGGATTTATGGACCTGACTTCAGGGTGTGTCAAGATTGCGGCAACAGGGCCAAAAAAGATTGCATCTTTAGAAGATGCAGAACTTGCTGTAAGGGACGTGGATACGACTGCAACACTCACGTGAAGAGCACATGGATCCCCTCAATCCGCCGCCGGGAGCGGGACATGGTGGTGGCTTCCGCCGCTGGTGGTGGCAGTAAGAGGCCAAGAGCTATAGTGGGGTCATCCCAAAATGCCACTGCCACTTCTCACAGTTCCAACTCCAATGCCACAACACCCAAAAGCTTAGCAACAATCTCTTCTCACCAAGATGGGAGGTTGAAAGAGAGTTTACCAGGGCATGTTCGTGCACCTGCAGTGTTCAAGTGTCACAGAGTCTCTGCCATTGGGAATGGTGAAGATGAGTTTGCGTACTTGGCAACGGTGCAGATCAGTGGCCATGTGTTCAAGGGGTTTCTGTATGACCATGGAGTTGATGGCAAAATTGGAAATGCAGTTCCTTGTGTTTCGGAACTGCAACTGGGAAACAATTGCAGTGGTAAGAACAGAGAATGTTCTTCTGCAATTGGACTTCCAAATAACACTGCATACCCTGCTTCTGCCACCTCAACATTTCTCAACAGGTGA 1032 0.5136 MSMLGLRDLVLIAQTPSLHQHHHHHHHQHQGQQQPISENQTPNLPLPSSAALSVGFGIFPLLTATPCVPHPHQTNEIQECGGGGGGAATTTNYWNLKMCPEVNPPKKGVMNMDDDEDEDDERHHQHKGVMESEENGIYGPDFRVCQDCGNRAKKDCIFRRCRTCCKGRGYDCNTHVKSTWIPSIRRRERDMVVASAAGGGSKRPRAIVGSSQNATATSHSSNSNATTPKSLATISSHQDGRLKESLPGHVRAPAVFKCHRVSAIGNGEDEFAYLATVQISGHVFKGFLYDHGVDGKIGNAVPCVSELQLGNNCSGKNRECSSAIGLPNNTAYPASATSTFLNR* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0274 343 MobiDBLite consensus disorder prediction 206 230 - -
Pvu5g0274 343 MobiDBLite consensus disorder prediction 32 48 - -
Pvu5g0274 343 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 246 293 IPR006511 -
Pvu5g0274 343 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 144 186 IPR006510 -
Pvu5g0274 343 PANTHER LRP1 CARBOXY-TERMINAL DOMAIN PROTEIN 2 336 - -
Pvu5g0274 343 Pfam Domain of unknown function (DUF702) 144 294 - -
Pvu5g0274 343 MobiDBLite consensus disorder prediction 113 135 - -
Pvu5g0274 343 MobiDBLite consensus disorder prediction 17 48 - -
Pvu5g0274 343 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 2 336 IPR007818 GO:0003700|GO:0006355
Pvu5g0274 343 MobiDBLite consensus disorder prediction 195 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0274 Pvu-Chr5 2370122 2372786 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0274 145 332 C2H2 Transcription Factor Family AT5G12330 53.234 8.65e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Pvu5g0274 DUF702 1.2e-54 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0274 - - vun:114175485 566.229