Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0268 ATGGAGGATAAATCAGAGAAGCAAGATGATAGCCACCCATCATCTCTCCTCCTCCTCCCTAATCATGGCACCATCAAGGAGGACAATTCTCCAAGGAAAGCCATTGGTGGTGGCAGTGATAGGCTGAAGAGGGATGAGTGGAGTGAAGGGGCTGTGTCGACCCTTCTTGAGGCCTATGAGGCCAAATGGGTGCTCAGAAACAGAGCCAAACTCAAGGGCCATGACTGGGAAGATGTTGCAAAACATGTCTCATCAAGAGCCAACTCCACCAAGTCACCAAAGACTCAGACTCAGTGCAAGAACAAGATTGAGTCCATGAAGAAAAGGTACAGATCAGAGTCTGCAACCACTGCTGATGCATCATCTTGGCCTTTGTACTCTCGCCTTGATCTTCTCCTGCGTGGCACAGGACCAGTATCTTCACTTCCACCACCACCACCAACACCAACAATAGCACCATCATTTCAACCACCACATGCTACCACCAATAATAACCAGGCTATGGTGCTGCTGGAGCCTCCTTCACTGGCTGCTTCACAACCTCCTCCTTCTGTTGCTCCTCCACCACTCACAATTGCACAAAACTCTCATGGATCCAATGGTGTTGAAAGACCAGCCAAGGAAGATGGGTTAGGAGGCAAATCATCTGAGCATGTATCTAACAAGAATCTAATGGACTCGGATAGTAGCACACCTGCTCTATACAGTGAAAAGGAGAAGGTGAGGTGCAACAAGAGGAAGATGAAAAGTGAGAACAACAACAAGAGGGTGAGAAGGAACAGTAATAGTAATAACAATAACAACAACAATGAAGACATGGACATAGCAGAAAGCATAAGGTGGCTAGCAGAAGTGGTGGTGAGATCAGAACAGACGAGAATGGACACAATGAAAGAAATTGAGAAGATGAGAGTTGAAGCTGAGGCAAAGAGAGGGGAGATGGAGCTCAAGAGAACTGAAATCATAGCCAATACTCAACTAGAGATTGCTAGGATCTTTGCAAGTGTCAACAAAGGTGTTGATTCTTCACTGAGAATTGGAAGAAGTTAA 1050 0.461 MEDKSEKQDDSHPSSLLLLPNHGTIKEDNSPRKAIGGGSDRLKRDEWSEGAVSTLLEAYEAKWVLRNRAKLKGHDWEDVAKHVSSRANSTKSPKTQTQCKNKIESMKKRYRSESATTADASSWPLYSRLDLLLRGTGPVSSLPPPPPTPTIAPSFQPPHATTNNNQAMVLLEPPSLAASQPPPSVAPPPLTIAQNSHGSNGVERPAKEDGLGGKSSEHVSNKNLMDSDSSTPALYSEKEKVRCNKRKMKSENNNKRVRRNSNSNNNNNNNEDMDIAESIRWLAEVVVRSEQTRMDTMKEIEKMRVEAEAKRGEMELKRTEIIANTQLEIARIFASVNKGVDSSLRIGRS* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0268 349 Pfam Myb/SANT-like DNA-binding domain 44 131 IPR044822 -
Pvu5g0268 349 MobiDBLite consensus disorder prediction 1 47 - -
Pvu5g0268 349 MobiDBLite consensus disorder prediction 175 272 - -
Pvu5g0268 349 MobiDBLite consensus disorder prediction 233 256 - -
Pvu5g0268 349 MobiDBLite consensus disorder prediction 137 162 - -
Pvu5g0268 349 MobiDBLite consensus disorder prediction 257 272 - -
Pvu5g0268 349 MobiDBLite consensus disorder prediction 26 47 - -
Pvu5g0268 349 Coils Coil 297 317 - -
Pvu5g0268 349 PANTHER SEQUENCE-SPECIFIC DNA BINDING TRANSCRIPTION FACTOR 31 345 - -
Pvu5g0268 349 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 31 345 IPR044823 -
Pvu5g0268 349 MobiDBLite consensus disorder prediction 216 232 - -
Pvu5g0268 349 Gene3D - 47 112 - -
Pvu5g0268 349 MobiDBLite consensus disorder prediction 139 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0268 Pvu-Chr5 2333592 2336056 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0268 8 146 Trihelix Transcription Factor Family AT3G14180 34.641 6.91e-20 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pvu5g0268 Myb_DNA-bind_4 8.4e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0268 - - gmx:100799917 483.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0268 5 2333592 2336056 Pvu5g0268 5 2333592 2336056 ECH